Crystallography software available at MacCHESS
HKL2000 and HKL (xdisp/denzo/scalepack)
HKL2000 and HKL (xdisp/denzo/scalepack), a graphical interface to Denzo, XdisplayF, Scalepack, and associated routines, is available, through a collaborative arrangement with HKL Research, on all the MacCHESS computers. All detectors in use on MacCHESS beamlines are supported.
type HKL2000 to start the program.
The mccview front-end program is available for convenient startup and logging of denzo and xdisp. Type mccview to start up the Java interface.
Experimenters from academic and non-commercial institutions may use the HKL programs for data evaluation and processing, while collecting data at the beamline. Users, holding a non-profit HKL license, can obtain, from HKL Research, Inc., the program upgrade to Version 1.96.6 to process data collected at CHESS.
Users, who do not have a permanent HKL license, can obtain free of charge a temporary license from HKL Research, Inc. to (re)process data collected at CHESS.
Users from commercial and for-profit institutions must have an appropriate commercial HKL license to use the program for data evaluation and processing, both when collecting data at the beamline and when processing data at home. The license can be obtained from HKL Research, Inc.
A few copies of the HKL Manual are on hand at CHESS. An on-line version is also available.
- Pilatus 6M at F1
- Pilatus 6M at A1
- Q-210 at A1, binned
- Q-210 at A1, unbinned
- Q-270 at F1, binned
- Q-270 at F1, unbinned
- Q-4 at F3
type "hkl2000" to start data processing
DPS processing programs
To run XDS create a new directory, change to it, place the XDS.INP there and edit it according to your project
type "xds_doc" for help and input file
Interactive DPS/Mosflm/CCP4 Data Processing Suite
User interface to be used to process images from variety of area detectors
type "imosflm" to process a set of data for an initial run
CCP4 suite documentation
For interface to CCP4 programs & file display
Laue processing software
The latest Phenix crystallographic software installed on MacCHESS
Find heavy atom positions using SAD data
type "SnB" or "BnP" to start up the Java interface
ARP/wARP is a software suite for improvement and objective interpretation of crystallographic electron density maps and automatic construction and refinement of macromolecular models
Multiple programs for structure solution and refinement
type "cns_web" for Web interface (runs ocally), including tutorial as well as tools for use
type "cns_solve" to run the program itself
Perform upto 6 dimensional molecular (envelope) replacement search
Determine the absolute configuration (hand) of the heavy atom substructure and calculate an FOM
O: A Package for Protein Crystallography
Map and molecule display, model building
type "start_o" and accept all the default answers
Model building and refinement tool
Fancy graphics: movies, rendering, and so much more...,
Sharp (on guideline only)