Publications 2020

chess_pubs2020

The First Convincing Demonstration of Protein Diffuse Scattering Data Collection and Analysis,  Opening the Door to Future  Applications in Structural Biology. DOI: 10.1038/s41467-020-14933-6

  1. Ando N. "Thinking Outside of the Lattice." ACA RefleXions" Spring Issue, 7-10, (2020)
  2. Bhargava A., Eppstein R., Sun J., Smeaton M.A., Paik H., Kourkoutis L.F., Schlom D.G., Toroker M.C., Robinson R.D. "Breakdown of the Small-Polaron Hopping Model in Higher-Order Spinels". Adv Mater., 32, 49, 2004490, 2020. DOI: 10.1002/adma.202004490. 
  3. Bhattacharyya J.J., Nair S., Pagan D.C., Tari V., Rollett A.D., and Agnew S.R. "In-situ high energy X-ray diffraction study of the elastic response of a metastable β-titanium alloy." Acta Materialia, 197, 300-308, 2020. doi: 10.1016/j.actamat.2020.07.050 Instrument: ID3A (FAST)
  4. Boyce, D., Shade P., Musinski W., Obstalecki M., Pagan D., Bernier J., and Turner T. "Estimation of anisotropic elastic moduli from high energy X-Ray data and finite element simulations." Materialia, 12, 100795. 2020. doi: 10.1016/j.mtla.2020.100795 Instrument: ID3A (FAST)
  5. Bua S., Lomelino C., Murray A.B., Osman S.M., ALOthman Z.A., Bozdag M., Abdel-Aziz H.A., Eldehna W.M., McKenna R., Nocentini A., Supuran C.T. "A Sweet Combination": Developing Saccharin and Acesulfame K Structures for Selectively Targeting the Tumor-Associated Carbonic Anhydrases IX and XII." J. Med. Chem. 2020 Jan 9;63(1):321-333. doi: 10.1021/acs.jmedchem.9b01669. Instrument F1
  6. Chen YS, Kozlov G, Fakih R, Yang M, Zhang Z, Kovrigin EL, Gehring K. "Mg2+-ATP Sensing in CNNM, a Putative Magnesium Transporter". Structure, 28(3), 324-335.e4.  2020; DOI: 10.1016/j.str.2019.11.016. Instrument F1.
  7. Coombs S.E., Banjade S., Kriksunov K., Clemente N., Zhao J., Wang C., Gillilan R.E., Oswald R.E. "In Vitro Effects of (+)MK-801 (dizocilpine) and Memantine on β-Amyloid Peptides Linked to Alzheimer's Disease", Biochemistry 59(48): 4517-4522 (2020). PMID: 33249825, DOI: 10.1021/acs.biochem.0c00813. Instrument ID7A1
  8. Cunci Li., González-Colón V., Vargas-Pérez B.L., Ortiz-Santiago J., Pagán M.,  Carrion P., Cruz J., Molina-Ontoria A., Martinez N., Silva W., Echegoyen L., and Cabrera C.R. "Multicolor Fluorescent Graphene Oxide Quantum Dots for Sensing Cancer Cell Biomarkers." ACS Applied Nano Materials 4, 1, 211-219. 2020. doi: 10.1021/acsanm.0c02526 Instrument: ID2A (PIPOXS)
  9. Derrien, TL (Derrien, Thomas L.); Hamada, S (Hamada, Shogo); Zhou, M (Zhou, Max); Smilgies, DM (Smilgies, Detlef-M); Luo, D (Luo, Dan); Three-dimensional nanoparticle assemblies with tunable plasmonics via a layer-by-layer process; NANO TODAY (30) 100823 (2020); DOI: 10.1016/j.nantod.2019.100823; Published: FEB 2020; Instrument: D1
  10. DiMucci I.M., MacMillan S.N., Walroth R.C, and Lancaster K.M. "Scrutinizing “Ligand Bands” via Polarized Single-Crystal X-ray Absorption Spectra of Copper (I) and Copper (II) Bis-2, 2′-bipyridine Species." Inorganic Chemistry 59, 18, 13416-13426. 2020. doi: 10.1021/acs.inorgchem.0c01800 Instrument: ID2A (PIPOXS)
  11. Eisemann T.J., Allen F., Laue K., Shimamura G.R., Jeffrey P.D., Hughson F.M. "The Sec1/Munc18 protein Vps45 holds the Qa-SNARE Tlg2 in an open conformation", Elife 9:e 60724 (2020 Aug 17). PMCID: PMC7470827, DOI: 10.7554/eLife.60724, Instrument F1
  12. Gadkari D., Shanks K.S., Philipp H.T., Tate M.W., Thom-Levy J., and Gruner S.M. "Characterization of an architecture for front-end pixel binning in an integrating pixel array detector." Journal of Instrumentation, 15, 11, T11002. 2020. doi: 10.1107/s0909049512035972 Instrument: ID3A (FAST)
  13. Gandhi S., Baker R.P., Cho S., Stanchev S., Strisovsky K., Urban S. "Designed Parasite-Selective Rhomboid Inhibitors Block Invasion and Clear Blood-Stage Malaria", Cell Chem Biol 27: 1410-1424 (2020). PMID: 32888502, PMCID: PMC7680425, DOI: 10.1016/j.chembiol.2020.08.01. Instrument ID7B2
  14. Garson, P (Garson, Peter); Campello, A (Campello, Arthur); Stein, MAS (Stein, Maximilian A. S.); Smilgies, DM (Smilgies, Detlef-M);  A simple sample-changing robot for grazing-incidence X-ray scattering; JOURNAL OF APPLIED CRYSTALLOGRAPHY (53);294-296 (2020); DOI: 10.1107/S1600576719014924; Published: FEB 2020; Instrument: D1
  15. Gustafson S., Ludwig W., Shade P., Naragani D., Pagan D., Cook P., Yildirim C,  Detlefs C., and Sangid M.D. "Quantifying microscale drivers for fatigue failure via coupled synchrotron X-ray characterization and simulations." Nature communications, 11, 1, 1-10. 2020. doi: 10.1038/s41467-020-16894-2 Instrument: ID3A (FAST)
  16. Hashimoto H., Kafkova L., Raczkowski, A., Jordan K.D., Read, L.K., Debler, EW. Structural Basis of Protein Arginine Methyltransferase Activation by a Catalytically Dead Homolog (Prozyme); JOURNAL OF MOLECULAR BIOLOGY (432) 2;410-426 (2020); DOI: 10.1016/j.jmb.2019.11.002; Published: JAN 17 2020, Instrument: F1
  17. Hofmann, AI (Hofmann, Anna I.); Ostergren, I (Ostergren, Ida); Kim, Y (Kim, Youngseok); Fauth, S (Fauth, Sven); Craighero, M (Craighero, Mariavittoria); Yoon, MH (Yoon, Myung-Han); Lund, A (Lund, Anja); Muller, C (Mueller, Christian); All-Polymer Conducting Fibers and 3D Prints via Melt Processing and Templated Polymerization; ACS APPLIED MATERIALS & INTERFACES (12) 7; 8713-8721 (2020); DOI: 10.1021/acsami.9b20615; Published: FEB 19 2020; Instrument: D1
  18. Huang, Q., Szebenyi, D. "Crystal structure of Snf7 under 200 MPa". In Press, 2020.
  19. Inagaki, TM (Inagaki, Thiago M.); Possinger, AR (Possinger, Angela R.); Grant, KE (Grant, Katherine E.); Schweizer, SA (Schweizer, Steffen A.); Mueller, CW (Mueller, Carsten W.); Derry, LA (Derry, Louis A.); Lehmann, J (Lehmann, Johannes); Kogel-Knabner, I (Koegel-Knabner, Ingrid); Subsoil organo-mineral associations under contrasting climate conditions; GEOCHIMICA ET COSMOCHIMICA ACTA (270) 244-263 (2020); DOI: 10.1016/j.gca.2019.11.030; Published: FEB 1 2020; Instrument: D1
  20. Joung, A., Pagan D.C., Gilbert J., Vien L., Ong I., Bonsignore C., and Paranjape H.M. "A Digital Image Correlation Methodology for the Characterization of Cyclic Deformation in Nickel-Titanium Medical Device Fatigue Test Specimens." DIC Methodology, 2020. Instrument: ID3A (FAST)
  21. Kasemer, M (Kasemer, Matthew); Dawson, P (Dawson, Paul); A finite element methodology to incorporate kinematic activation of discrete deformation twins in a crystal plasticity framework; COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING (358) 112653 (2020); DOI: 10.1016/j.cma.2019.112653; Published: JAN 1 2020; Instrument: F2
  22. Kim, JK; Lee, C; Lim, SW; Andring, JT; Adhikari, A; McKenna, R; Kim, CU, "Structural insights into the effect of active-site mutation on the catalytic mechanism of carbonic anhydrase", IUCrJ 7: 985-994 (2020). PMID: 33209313, PMCID: PMC7642793, DOI: 10.1107/S2052252520011008. Instrument ID7B2
  23. Kim YJ, Lee S, Niazi MR, Hwang K, Tang MC, Lim DH, Kang JS, Smilgies DM, Amassian A, Kim DY. Systematic Study on the Morphological Development of Blade-Coated Conjugated Polymer Thin Films via In Situ Measurements. ACS Appl. Mater. Interfaces, 12, 32, 36417–36427, (2020); DOI: 10.1021/acsami.0c07385. Instrument: D1
  24. Kosciuk, T., Price, I., Zhang, X., Zhu, C., Johnson, K., Zhang, S., Halaby, S., Komaniecki, G., Yang, M., DeHar, C.,  Thomas, P., Kelleher, N., Fromme, J.C.,  and Lin, H. "NMT1 and NMT2 are Lysine Myristoyltransferases Regulating the ARF6 GTPase Cycle" Nature Communications 11 (2020) 1067; DOI: 10.1038/s41467-020-14893-x. Instrument F1
  25. Kozlov G., Funato Y., Chen, Y.S., Zhang Z., Illes K., Miki H., Gehring K. "PRL3 phosphatase activity is necessary and sufficient to promote metastatic growth", J Biol Chem 295: 11682-11692 (2020). PMID: 32571875, PMCID: PMC7450121 (available on 2021-8-14), DOI: 10.1074/jbc.RA120.014464. Instrument: F1
  26. Krogstad, MJ (Krogstad, Matthew J.); Rosenkranz, S (Rosenkranz, Stephan); Wozniak, JM (Wozniak, Justin M.); Jennings, G (Jennings, Guy); Ruff, JPC (Ruff, Jacob P. C.); Vaughey, JT (Vaughey, John T.); Osborn, R (Osborn, Raymond); Reciprocal space imaging of ionic correlations in intercalation compounds; NATURE MATERIALS (19) 1 ;63 (2020); DOI: 10.1038/s41563-019-0500-7; Published: JAN 2020; Instrument: A1
  27. Kumar S., Gillilan R.E., Yernool D.A. "Structure and function of the juxtamembrane GAF domain of potassium biosensor KdpD", Protein Sci 29(9): 2009-2021 (2020). PMID: 32713093, PMCID: PMC7454560, DOI: 10.1002/pro.3920. Instrument: ID7A1
  28. Li L., Molodtsov V., Lin W., Ebright R.H., Zhang Y. “RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription”. PNAS 117, 5801-5809, 2020, DOI: 10.1073/pnas.1920747117, Instrument F1
  29. Lussier-Price M., Mascle X.H., Cappadocia L., Kamada R., Sakaguchi K., Wahba H.M. Omichinski J.G. "Characterization of a C-terminal SUMO-interacting motif present in select PIAS-family proteins", Structure 28: 573-585 (2020). PMID: 32348746 DOI: 10.1016/j.str.2020.04.002. 
  30. Mascle, XH (Mascle, Xavier H.); Gagnon, C (Gagnon, Christina); Wahba, HM (Wahba, Haytham M.); Lussier-Price, M (Lussier-Price, Mathieu); Cappadocia, L (Cappadocia, Laurent); Sakaguchi, K (Sakaguchi, Kazuyasu) ; Omichinski, JG (Omichinski, James G.); Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner; STRUCTURE (28) 2, 157 (2020); DOI: 10.1016/j.str.2019.11.019; Published: FEB 4 2020; Instrument: F1
  31. Meisburger S.P., Case D.A. & And, N. “Diffuse X-ray scattering from correlated motions in a protein crystal.” Nat Commun., 11, 1271, 2020, DOI: 10.1038/s41467-020-14933-6, Instrument F1
  32. Naseri N.N., Ergel B., Kharel P., Na Y., Huang Q., Huang R., Dolzhanskaya N., Burré J., Velinov M.T., Sharma M. "Aggregation of mutant cysteine string protein-α via Fe-S cluster binding is mitigated by iron chelators". Nat. Struct. Mol. Biol., 27, 2,192-201, 2020. DOI: 10.1038/s41594-020-0375-y Instrument F3
  33. Niazi M., Florio T.J., Yang R., Lokareddy R.K., Swanson N,A,. Gillilan R.E., Cingolani G. "Biophysical analysis of Pseudomonas-phage PaP3 small terminase suggests a mechanism for sequence-specific DNA-binding by lateral interdigitation", Nucl Acids Res 48(20): 11721-11736 (2020). PMID: 33125059, PMCID: PMC7672466, DOI: 10.1093/nar/gkaa866. Instrument: ID7A1
  34. Nygren K.E., Pagan D.C., Bernier J.V., and Miller M.P. "An algorithm for resolving intragranular orientation fields using coupled far-field and near-field high energy X-ray diffraction microscopy." Materials Characterization, 165, 110366. 2020. doi: 10.1016/j.matchar.2020.110366 Instrument: ID3A (FAST)
  35. Pagan D.C., Jones K.K., Bernier J.V., and Phan T.Q. "A Finite Energy Bandwidth-Based Diffraction Simulation Framework for Thermal Processing Applications." JOM 72, no. 12 (2020): 4539-4550. 2020. doi: 10.1007/s11837-020-04443-7 Instrument: ID3A (FAST)
  36. Paul P.P., Paranjape H.M., Amin-Ahmadi B., Pagan D.C., Chumlyakov Y.I, and Brinson L.C. "Heterogeneity and inelasticity of deformation in a notched martensitic NiTi shape memory alloy specimen." Acta Materialia, 194, 49-59. 2020. doi: 10.1016/j.actamat.2020.05.019 Instrument: ID3A (FAST)
  37. Petreni A., Bonardi A., Lomelino C., Osman S.M., ALOthman Z.A., Eldehna W.M., El-Haggar R., McKenna R., Nocentini A., Supuran C.T. “Inclusion of a 5-fluorouracil moiety in nitrogenous bases derivatives as human carbonic anhydrase IX and XII inhibitors produced a targeted action against MDA-MB-231 and T47D breast cancer cells”., Eur J. Med Chem 190, 112112, 2020, DOI: 10.1016/j.ejmech.2020.112112, Instrument F1
  38. Plumridge, A (Plumridge, Alex); Andresen, K (Andresen, Kurt); Pollack, L (Pollack, Lois); Visualizing Disordered Single-Stranded RNA: Connecting Sequence, Structure, and Electrostatics; JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (142) 1;109-119 (2020); DOI: 10.1021/jacs.9b04461; Published: JAN 8 2020; Instrument: G1
  39. Rebowski G., Boczkowska M., Drazic A., Ree R., Goris M., Arnesen T., Dominguez R. "Mechanism of actin N-terminal acetylation". Science Advances, 6, 15, eaay8793,  08 Apr 2020; DOI: 10.1126/sciadv.aay8793. Instrument F1
  40. Rosenbloom, SI (Rosenbloom, Stephanie, I); Gentekos, DT (Gentekos, Dillon T.); Silberstein, MN (Silberstein, Meredith N.); Fors, BP (Fors, Brett P.); Tailor-made thermoplastic elastomers: customisable materials via modulation of molecular weight distributions; CHEMICAL SCIENCE (11) 5, 1361-1367 (2020); DOI: 10.1039/c9sc05278j; Published: FEB 7 2020; Instrument: D1
  41. Selig, MJ (Selig, Michael J.); Gamaleldin, S (Gamaleldin, Sara); Celli, GB (Celli, Giovana B.); Marchuk, MA (Marchuk, Meghan A.); Smilgies, DM (Smilgies, Detlef-M.); Abbaspourrad, A (Abbaspourrad, Alireza) ; The stabilization of food grade copper-chlorophyllin in low pH solutions through association with anionic polysaccharides; FOOD HYDROCOLLOIDS (98) 105255 (2020); DOI: 10.1016/j.foodhyd.2019.105255; Published: JAN 2020; Instrument: D1
  42. Shin Y., Hedglin M., Murakami K.S. ”Structural Basis of Reiterative Transcription From the pyrG and pyrBI Promoters by Bacterial RNA Polymerase”. Nucl Acids Res 48, 2144-2155, 2020. DOI: 10.1093/nar/gkz1221; Instrument F1
  43. Shin J-H., Sulpizio A.G., Kelley A., Alvarez L., Murphy S.G., Fan L., Cava F., Mao Y., Saper M.A. and Dörr T. "Structural basis of peptidoglycan endopeptidase regulation", PNAS 117(21): 11692-11702 (2020). PMID: 32393643, PMCID: PMC7261138, DOI: 10.1073/pnas.2001661117. Instrument: ID7B2
  44. Sven G,, Ludwig W., Shade P., Naragani D., Pagan D., Cook P., Yildirim C,. Detlefs C., and Sangid M.D. "Quantifying microscale drivers for fatigue failure via coupled synchrotron X-ray characterization and simulations." Nature communications, 11, 1, 1-10. 2021. doi: 10.1038/s41467-020-16894-2. Instrument: ID3A (FAST)
  45. Tang, MC (Tang, Ming-Chun); Fan, YY (Fan, Yuanyuan); Barrit, D (Barrit, Dounya); Chang, XM (Chang, Xiaoming); Dang, HX (Dang, Hoang X.); Li, RP (Li, Ruipeng); Wang, K (Wang, Kai); Smilgies, DM (Smilgies, Detlef-M.); Liu, S (Liu, Shengzhong (Frank)); De Wolf, S (De Wolf, Stefaan); Anthopoulos, TD (Anthopoulos, Thomas D.); Zhao, K (Zhao, Kui); Amassian, A (Amassian, Aram) ;Ambient blade coating of mixed cation, mixed halide perovskites without dripping: in situ investigation and highly efficient solar cells; JOURNAL OF MATERIALS CHEMISTRY A (8) 3, 1095-1104 (2020); DOI: 10.1039/c9ta12890e; Published: JAN 21 2020; Instrument: D1
  46. Wang Y, Feng X, Xiong Y, Stoupin S, Huang R, Zhao M, Xu M, Zhang P, Zhao J, Abruña HD. An Innovative Lithium Ion Battery System Based on a Cu2S Anode Material. ACS Appl Mater Interfaces. 2020 Apr 6. DOI: 10.1021/acsami.9b21982.Instrument: 
  47. Welty, R (Welty, Robb); Rau, M (Rau, Michael); Pabit, S (Pabit, Suzette); Dunstan, MS (Dunstan, Mark S.); Conn, GL (Conn, Graeme L.); Pollack, L (Pollack, Lois); Hall, KB (Hall, Kathleen B.); Ribosomal Protein L11 Selectively Stabilizes a Tertiary Structure of the GTPase Center rRNA Domain; JOURNAL OF MOLECULAR BIOLOGY (432) 4; 991-1007 (2020); DOI: 10.1016/j.jmb.2019.12.010; Published: FEB 14 2020; Instrument: D1
  48. Xu S.Y., Ma Q., Gao Y., Kogar A., Zong A., Valdivia A.M.M., Dinh T.H., Huang S.M., Singh B., Hsu C.H., Chang T.R., Ruff, J.P.C., Watanabe K., Taniguchi T., Lin H., Karapetrov G., Xiao D., Jarillo-Herrero P., Gedik N. "Spontaneous gyrotropic electronic order in a transition-metal dichalcogenide". NATURE, 578, 7796, 545, 2020.  DOI: 10.1038/s41586-020-2011-8; Published: FEB 2020 Instrument: A1
  49. Zhang, F.X., Tong Y., Velisa G., Bei H., Weber W,J., Zhang YW.. "Local structure of Ni80X20 (X: Cr, Mn, Pd) solid-solution alloys and its response to ion irradiation". JOURNAL OF PHYSICS-CONDENSED MATTER, 32, 7, 074002. 2020. DOI: 10.1088/1361-648X/ab5388. Instrument: F2