Publications 2024

in situ XAS experiments

Lopez-Astacio H., Vargas-Perez B.L., Del Valle-Perez A., Pollock C.J. and Cunci L. "Open-source electrochemical cell for in situ X-ray absorption spectroscopy in transmission and fluorescence modes."

  1. Abdelhady A.W., Mittan‑Moreau D.W., Crane P.L., McLeod M.J., Soon Hon Cheong S.H., Thorne R.E. "Ice formation and its elimination in cryopreservation of oocytes." Sci. Rep., 14, 18809, 2024. doi: 10.1038/s41598-024-69528-8 Instrument: ID7B2 (HPBio MX & FlexX)
  2. Adams M.C, Schiltz C.J., Sun J., Hosford C.J., Johnson V.M., Pan H., Borbat P.P., Freed J.H., Thomason L.C., Court C., Court D.L., Chappie J.C. "The crystal structure of bacteriophage λ RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins." Nucleic Acids Research, 52, 8, 4659–4675, 2024. doi: 10.1093/nar/gkae212. Instrument: F1
  3. Aplin C., Zielinski K.A., Pabit S., Ogunribido D., Katt W.P., Pollack L., Cerione R.A., Milano S.K. "Defining the conformational states that enable transglutaminase 2 to promote cancer cell survival versus cell death." bioRxiv. Preprint. 2024. doi: 10.1101/2024.02.04.578794. Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  4. Balu K.E., Almohdar D., Ratcliffe J., Tang Q., Parwal T., Çağlayan M. "Structural and biochemical characterization of LIG1 during mutagenic nick sealing of oxidatively damaged ends at the final step of DNA repair." bioRxiv. Preprint. 2024. doi: 10.1101/2024.05.06.592774. Instrument: ID7B2 (HPBio MX & FlexX)
  5. Balu K.E., Gulkis M., Almohdar D., Çağlayan M. "Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA." JBC, 300, 5, 107216, 2024, doi: 10.1016/j.jbc.2024.107216 Instrument: ID7B2 (HPBio MX & FlexX)
  6. Balu K.E., Tang Q., Almohdar A., Ratcliffe J., Kalaycioğlu M., Çağlayan M. "Structures of LIG1 uncover a mechanism for a sugar discrimination against a ribonucleotide at the 5'-end of nick DNA during ribonucleotide excision repair." JBC, In press. 2024. doi:https://doi.org/10.1016/j.jbc.2024.107688 Instrument: ID7B2 (HPBio MX & FlexX)
  7. Bhagwandin D.D., Page K.A., Tran L.D., Yao Y., Reidell A., Muratore C., Fang Q., Ruditskiy A., Hampton C.M., Kennedy W.J., Drummy L.F., Zhong Y., Marks T.J., Facchetti A., Lou J., Koerner H., Baldwin L.A., Glavin N.R. "Orientation and morphology control in acid-catalyzed covalent organic framework thin films." Nanoscale, 2, 16, 17, 8369-8377, 2024. doi: 10.1039/d3nr05798d. Instrument: ID3B (FMB)
  8. Debnath J., Keshamasetthy D., Combs J., Leon K., Vullo D., Chatterjee A., McKenna R., Supuran C.T. "A comparative study of diaryl urea molecules with and without sulfonamide group on Carbonic anhydrase IX and XII inhibition and its consequence on breast cancer cells." Bioorganic Chemistry, 145, 107192, 2024. doi: 10.1016/j.bioorg.2024.107192 Instrument: ID7B2 (HPBio MX & FlexX)
  9. Gao T., Kabir S., Wu J. "Structure of Talin Bound to β2 Integrin Unveils the Molecular Mechanism of Species-Specific Integrin Activation." bioRxiv. Preprint. 2024. doi: 10.1101/2024.05.28.596271 Instrument: ID7B2 (HPBio MX & FlexX)
  10. Guerrero L., Ebrahim A., Riley B.T., Kim M., Huang Q., Finke A.D., Keedy D.A. "Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of STEP". Nat. Commun. Biol. 7, 59, 2024. doi.org: 10.1038/s42003-023-05609-0. Instrument: ID7B2 (HPBio MX & FlexX)
  11. Hossain M.A., Sarin R., Donnelly D.P., Miller B.C., Weiss A., McAlary L., Antonyuk S.V., Salisbury J.P., Amin J., Conway J.B., Watson S.S., Winters J.N., Xu Y., Alam N.,  Brahme R.R., Shahbazian H.,  Sivasankar D., Padmakumar S., SattarovaA., Ponmudiyan A.C., Gawde T., Verrill D.E., Yang W., Kaanapali S., Plant L.D., Auclair J.R., Makowski L., Petsko G.A., Ringe D., Agar N.Y.R., Greenblatt D.J., Ondrechen M.J., Chen Y., Yerbury J.J., Manetsch R., Hasnain S.S., Brown R.H. Jr., Agar J.N. "Evaluating protein cross-linking as a therapeutic strategy to stabilize SOD1 variants in a mouse model of familial ALS." PLOS Biology, 2024. doi: 10.1371/journal.pbio.3002462 Instrument: G1
  12. Jayamaha H., Ugras T.J., Page K.A., Hanrath T., Robinson R.D., Shepherd L.M. "Chiroptical Strain Sensors from Electrospun Cadmium Sulfide Quantum-Dot Fibers." ACS Appl. Mater. Interfaces. 16, 14, 17757-17765, 2024. doi: 10.1021/acsami.3c17623 Instrument: ID3B (FMB)
  13. Jiang S., Chen X., Huang X., Li C., Wang Z., Zhao B., Zhang L., Zhou G., Fang J.J. "Randomly Layered Superstructure of In2O3 Truncated Nano-Octahedra and Its High-Pressure Behavior." Am. Chem. Soc., 146, 12, 8598-8606, 2024. doi: 10.1021/jacs.4c00563. Instrument: B1
  14. Kayrouz C.M., Ireland K.A., Ying V., Davis K.M., Mohammad R. Seyedsayamdost M.R. "Ovoselenol, a Selenium-containing Antioxidant Derived from Convergent Evolution." bioRxiv. Preprint. 2024. doi: 10.1101/2024.04.10.588772 Instrument: ID7B2 (HPBio MX & FlexX)
  15. Khojastegi A., Khosropour A., Amirjalayer S., MoslehI., Abbaspourrad A. "Modulating Narrow Bandgap in a Diacetylene Functionalized Woven Covalent Organic Framework as a Visible Light Responsive Photocatalyst." Wiley Online Library, 2024. doi: 10.1002/adfm.202309367 Instrument: ID7B2 (HPBio MX & FlexX)
  16. Li S., Xu X., Kocoj C.A., Zhou C., Li Y., Chen D., Bennett J.A., Liu S., Quan L., Sarker S., Liu M., Qiu D.Y., Guo P. "Large exchange-driven intrinsic circular dichroism of a chiral 2D hybrid perovskite." Nat. Commun., 5, 1, 2573, 2024. doi: 10.1038/s41467-024-46851-2. Instrument: ID4B (QM2)
  17. Li W., Lee S., Zhang T., Jin Y., Pagan D., Casalena L., Mills M., Bucsek A. "3D in-situ characterization of dislocation density in nickel-titanium shape memory alloys using high-energy diffraction microscopy." Acta Materialia, 266, 19659,ISSN 1359-6454, 2024. doi: 10.1016/j.actamat.2024.119659. Instrument: B2
  18. Li Y., Plummer A., Werner J.G. "Chemically Nanostructured Organogel Monoliths from Cross-Linked Block Copolymers for Selective Infusion Templating." ACS Nano, 18(29), 19150-19160, 2024, doi: 10.1021/acsnano.4c04394. Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  19. Lopez-Astacio H., Vargas-Perez B.L., Del Valle-Perez A., Pollock C.J., and Cunci L. "Open-source electrochemical cell for in situ X-ray absorption spectroscopy in transmission and fluorescence modes." J. Synchrotron Rad., 31, 322-327, 2024. doi:  10.1107/S1600577524000122. Instrument: ID2A (PIPOXS)
  20. Meisburger S.P., Ando N. "Scaling and merging macromolecular diffuse scattering with mdx2". Acta Cryst. D, 80, 5, 299-313, 2024. doi: 10.1107/S2059798324002705. Instrument: F1
  21. Morin C., Verma V.T., Arya T., Casu B., Jolicoeur E., Ruel R., Marinier A.M., Sygusch J., Baron C. "Structure-based design of small molecule inhibitors of the cagT4SS ATPase Cagα of Helicobacter pylori." Biochemistry and Cell Biology, 2024. doi: 10.1139/bcb-2023-0331 Instrument: G1
  22. Nagaoka Y., Schneider J., Jin N., Cai T., Liu Y., Wang Z., Li R., Kim K.S., Chen O. "Dynamic Transformation of High-Architectural Nanocrystal Superlattices upon Solvent Molecule Exposure". J. Am. Chem. Soc., doi: 10.1021/jacs.3c14603. Online ahead of print. Instrument: B1
  23. Peng K., Wallace S.D., Bagde S.R., Shang J., Anmangandla A., Jana S., Fromme J.C., Lin H. "GS-441524-Diphosphate-Ribose Derivatives as Nanomolar Binders and Fluorescence Polarization Tracers for SARS-CoV-2 and Other Viral Macrodomains". ACS Chem. Biol., 2024. doi: 10.1021/acschembio.4c00027. ID7B2 (HPBio MX & FlexX)
  24. Petraccione K., Ali M.J.H., Cyr N., Wahba H.M., Stocker T., Akhrymuk M., Akhrymuk I., PannyL., Bracci N., Cafaro R., Sastre D., Silberfarb A., O’Maille P., Omichinski J., Kehn-Hall K. "An LIR motif in the Rift Valley fever virus NSs protein is critical for the interaction with LC3 family members and inhibition of autophagy." doi: 10.1371/journal.ppat.1012093 Instrument: ID7B2 (HPBio MX & FlexX)
  25. Sedinkin S.L., Roche J., Venditti V. "Elucidation of the Mechanisms of Inter-domain Coupling in the Monomeric State of Enzyme I by High-pressure NMR." JMB, 436, 9 , 168553, 2024. doi: 10.1016/j.jmb.2024.168553. Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  26. Schneps C.M., Dunleavy R., Crane B.R. "Dissecting the Interaction between Cryptochrome and Timeless Reveals Underpinnings of Light-Dependent Recognition." Biochemistry, 63, 4, 2024. doi: 10.1021/acs.biochem.3c00630 Instrument: ID7A1 (HP BioSAXS & BioSAXS) 
  27. Schuelke-Sanchez A., Yennawar N.H., Weinert E.E. "Oxygen-selective regulation of cyclic di-GMP synthesis by a globin coupled sensor with a shortened linking domain modulates Shewanella sp. ANA-3 biofilm." Journal of Inorganic Biochemistry,  252, 112482, 2024. doi: 10.1016/j.jinorgbio.2024.112482 Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  28. Sherik M., Eves R., Guo S., Lloyd C.J., Klose K.E., Davies P.L. "Sugar-binding and split domain combinations in repeats-in-toxin adhesins from Vibrio cholerae and Aeromonas veronii mediate cell-surface recognition and hemolytic activities." mBio. 15:e02291-23, 2024. doi: 10.1128/mbio.02291-23. Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  29. Winnikoff J.R., Milshteyn D., Vargas-Urbano S.J., Pedraza-Joya M.A., Armando A.M., Quehenberger O., Sodt A., Gillilan R.E., Dennis E.A., Lyman E., Haddock S.H.D., Budin I. "Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates." Science, 384, 6703, 1482-1488, 2024. doi: 10.1126/science.adm7607. Instrument: ID7A1 (HP BioSAXS & BioSAXS)
  30. Wu H., Chen L., Malinowski P., Jang B.G., Deng Q., Scott K., Huang J., Ruff J.P.C., He Y., Chen X., Hu C., Yue Z., Oh J.S., Teng X., Guo Y., Klemm M., Shi C., Shi Y., Setty C., Werner T., Hashimoto M., Lu D., Yilmaz T., Vescovo E., Mo S.K., Fedorov A., Denlinger J.D., Xie Y., Gao B., Kono J., Dai P., Han Y., Xu X., Birgeneau R.J., Zhu J.X., da Silva Neto E.H., Wu L., Chu J.H., Si Q., Yi M. "Reversible non-volatile electronic switching in a near-room-temperature van der Waals ferromagnet." Nat. Commun., 15, 1, 2739, 2024. doi: 10.1038/s41467-024-46862-z. Instrument: ID4B (QM2)
  31. Xu W., Zeng R., Rebarchik M., Posada-Borbón A., Li H., Pollock C.J., Mavrikakis M., Abruña H.D. "Atomically Dispersed Zn/Co–N–C as ORR Electrocatalysts for Alkaline Fuel Cells." J. Am. Chem. Soc., 146, 4, 2593-2603, 2024. doi: 10.1021/jacs.3c11355. Instrument: ID2A (PIPOXS)
  32. Ye Q., Henrickson A., Demeler B., Serrão V.H.B., Davies P.L. "Human calpain-3 and its structural plasticity: dissociation of a homohexamer into dimers on binding titin" bioRxiv 2024.02.28.582628; doi: 10.1101/2024.02.28.582628 (This article is a preprint and has not been certified by peer review)
  33. Zawistowski R.K., Crane B.R. "Differential responses in the core, active site and peripheral regions of cytochrome c peroxidase to extreme pressure and temperature." bioRxiv 2024. doi: 10.1101/2024.07.24.604936 (This article is a preprint and has not been certified by peer review). Instrument: ID7B2 (HPBio MX & FlexX)

  34. Zhang Z., Chaudhuri K., Kaefer F., Malanoski A.P., Page K.A., Smieska L.M., Pham J.T., Ober C.K. "Controlling Anti-Penetration Performance by Post-Grafting of Fluorinated Alkyl Chains onto Polystyrene-block-poly(vinyl methyl siloxane)." ACS Appl. Mater. Interfaces. 16, 15, 19594-19604 2024. doi: 10.1021/acsami.4c01905 Instrument: ID3B (FMB)

    Nicholas A. Bachus, Maria Strantza, Bjørn Clausen, Christopher R. D’Elia, Michael R. Hill, J.Y. Peter Ko, Darren C. Pagan, Donald W. Brown, Novel bulk triaxial residual stress mapping in an additive manufactured bridge sample by coupling energy dispersive X-ray diffraction and contour method measurements, Additive Manufacturing,Volume 83,2024,104070,ISSN 2214-8604, https://doi.org/10.1016/j.addma.2024.104070.

    Hansadi Jayamaha, Thomas J. Ugras, Kirt A. Page, Tobias Hanrath, Richard D. Robinson, and Larissa M. Shepherd; Chiroptical Strain Sensors from Electrospun Cadmium Sulfide Quantum-Dot Fibers;ACS Applied Materials & Interfaces 2024 16 (14), 17757-17765; DOI: 10.1021/acsami.3c1762

    Shomik Mukhopadhyay, Kevin Hom, Alex deJong, Timothy Long, Todd C. Hufnagel, Amlan Das, Katherine S. Shanks, Mirko Schoenitz, Edward L. Dreizin, X-ray imaging of powder particles driven from a surface by a nearby electrostatic discharge,
    Advanced Powder Technology, Volume 35, Issue 6, 2024, 104472, ISSN 0921-8831, https://doi.org/10.1016/j.apt.2024.104472