Publications 2009


  1. Ahmed AH, Thompson MD, Fenwick MK, Romero B, Loh AP, Jane DE, Sondermann H, Oswald RE, "Mechanisms of antagonism of the GluR2 AMPA receptor: structure and dynamics of the complex of two willardiine antagonists with the glutamate binding domain," Biochemistry 48(18), 3894-903 (2009).
  2. Ahmed, AH, Wang Q, Sondermann H, Oswald RE, "Structure of the S1S2 glutamate binding domain of GluR3," Proteins: Structure, Function, and Bioinformatics 75, 628-637 (2009).
  3. Alvarado D, Klein DE, and Lemmon MA, "ErbB2 resembles an autoinhibited invertebrate epidermal growth factor receptor," Nature 461, 287-291 (2009).
  4. Amassian A, Pozdin VA, Desai TV, Hong S, Woll AR, Ferguson JD, Brock JD, Malliaras GG, Engstrom JR, "Post-deposition reorganization of pentacene films deposited on low-energy surfaces," J. Mater. Chem. 19, 5580 (2009).
  5. Amassian A, Desai TV, Kowarik S, Hong S, Woll AR, Malliaras GG, Schreiber F, Engstrom JR, "Coverage dependent adsorption dynamics in hyperthermal organic thin film growth," J. Chem. Phys. 130, 124701 (2009).
  6. Avvaru BS, Busby SA, Chalmers MJ, Griffin PR, Venkatakrishnan B, Agbandje-McKenna M, Silverman DN, McKenna R, "Apo-human carbonic anhydrase revisited: implications of the loss of a metal in protein structure, stability, and solvent network," Biochemistry 48, 7365-7372 (2009).
  7. Barrea RA, Huang R, Cornaby S, Bilderback DH, Irving TC, "High-flux hard x-ray microbeam using a single-bounce capillary with doubly focused undulator beam," J. Synchrotron Rad 16, 76-82 (2009).
  8. Barstow B, Ando N, Kim CU, Gruner SM, "Coupling of pressure-induced structural shifts to spectral changes in a yellowfluorescent protein," Biophys J. 97(6), 1719-27 (2009).
  9. Bazarov I, Belomestnykh S, Chojnacki E, Dobbins J, Dunham B, Ehrlich R, Forster M, Gulliford CI, Hoffstaetter G, Li H, Li Y, Liepe M, Liu X, Loehl F, Ouzounov D, Padamsee H, Gulliford D, Rice D, Shemelin V, Smith E, Smolenski K, Tigner M, Veshcherevich V , "Initial Beam Results From the Cornell High-current ERL Injector Prototype," Proceedings PAC09, Vancouver/CA , (2009).
  10. Bedzyk MJ, "X-Ray Standing Waves at the Total Reflection Condition: Direct Method and Coherence Effects," [cond-mat.mes-hall] 0908.2115v1, 1-13 (2009).
  11. Bhattacharjee RR, Li R, Estevez L, Smilgies DM, Amassian A, Giannelis EP, "A plasmonic fluid with dynamically tunable optical properties," J. Mater. Chem 19, 8728-8731 (2009).
  12. Caffrey M., Cherezov V, "Crystallizing membrane proteins using lipidic mesophases," Nature Protocols 4(5), 706-731 (2009).
  13. Cardona F, Parmeggiani C, Faggi E, Bonaccini C, Gratteri P, Sim L, Gloster TM, Roberts S, Davies GJ, Rose DR, and Goti A, "Total Syntheses of Casuarine and Its 6/O-a-Glucoside: Complementary Inhibition towards Glycoside Hydrolases of teh GH31 and GH37 Families," Chem Eur J 15, 1627-1636 (2009).
  14. Cetinol M, Wilkinson AP, Lind C, "In situ high-pressure synchrotron x-ray diffraction study of Zr2(WO4)(PO4)2 up to 16 GPa," Phys. Rev. B 79, 224118/1-224118/10 (2009).
  15. Chen HJ, Li SY, Liu XJ, Li RP, Smilgies DM, Wu ZH, Li Z, "Evaluation on Pore Structures of Organosilicate Thin Films by Grazing Incidence Small-Angle X-ray Scattering," J. Phys. Chem B. 113(38), 12623-12627 (2009).
  16. Chen YF, Tate MW, Gruner SM, "Facilitating protein crystal cryoprotection in thick-walled plastic capillaries by high-pressure cryocooling," J. App. Cryst. 42, 525-530 (2009).
  17. Chojnacki E, Belomestnykh S, Chapman S, Ehrlich R, Hoffstaetter G, Liepe M, Padamsee H, Sears J, Smith E, Veshcherevich V, "Design of an ERL Linac Cryomodule," Proceedings PAC09, Vancouver/CA , (2009).
  18. Cornaby S, Szebenyi DM, Smilgies DM, Schuller DJ, Gillilan R, Hao Q,Bilderback DH, "Feasibility of one-shot-per-crystal structure determination using Laue diffraction," Acta Crystallogr D Biol Crystallogr 66(Pt1), 2-11 (2009).
  19. Crittenden JA, Bazarov IV, Belomestnykh SA, Bilderback DH, Billing MG, Brock JD, Chojnacki EP, Dunham BM, Ehrlichman MP, Forster MJ, Gruner SM, Hoffstaetter GH, Johnstone CJ, Li Y, Liepe MU, Mayes CE, Mikhailichenko AA, Padamsee HS, Peck SB, Sagan DC, Shemelin VD, Temnykh A, Tigner M, Veshcherevich V, "Developments for Cornell`s X-ray ERL," Proceedings PAC09, Vancouver/CA , (2009).
  20. Crossland EJW, Kamperman M, Nedelcu M, Ducati C, Wiesner U, Smilgies DM, Toombes GES, Hillmyer MA, Ludwigs S, Steiner U, Snaith HJ, "A Bicontinuous Double Gyroid Hybrid Solar Cell," Nano Lett 9 (8), 2807-2812 (2009).
  21. Darko C, Botiz I, Reiter G, Breiby DW, Andreasen JW, Roth SV, Smilgies DM, Metwalli E, Papadakis CM, "Crystallization in diblock copolymer thin films at different degrees of supercooling," Phys Rev E Stat Nonlin Soft Matter Phys 79(4), 041802 (2009).
  22. Das K, Bandwar RP, White KL, Feng JY, Sarafianos SG, Tuske S, Tu X, Clark, Jr AD, Boyer PL, Hou X, Gaffney BL, Jones RA, Miller MD, Hughes SH, Arnold E, "Structural BAsis for the Roles of the K65R Mutation in HIV-1 Reverse Transcriptase Polymerization, Excision Antagonism, and Tenofovir Resistance," J. Biol Chem, PMID: 19812032 284(50), 35092-100 (2009).
  23. Dias SMG, Wilson KF, Rojas KS, Ambrosio ALB, Cerione RA, "The molecular basis for the regulation of the cap-binding complex by the importins," Nature Structural & Molecular Biology, PMCID: PMC2782468 16(9), 930-7 (2009).
  24. Durygin A, Drozd V, Paszkowicz W, Werner-Malento E, Buczko R, Kaminska A, Saxena S, Suchocki A, "Equation of state of gadolinium gallium garnet crystals: Experiment and ocmputational study," Applied Physics Letter 95, 141902 (2009).
  25. Ehrlichman MP, Hoffstaetter G, "Collimating Touschek Particles in an Energy Recovery Linear Accelerator," Proceedings PAC09, Vancouver/CA, (2009).
  26. Ferguson JD, Arikan G., Dale DS, Woll AR, Brock JD, "Measurements of Surface Diffusivity and Coarsening during Pulsed Laser Deposition," Phys. Rev. Lett. 103, 256103 (2009).
  27. Gao X, Lu F, Zhou L, Dang S, Sun L, Li X, Wang J, Shi Y, "Structure and Mechanism of an Amino Acid Antiporter," Science 324, 1565 (2009).
  28. Ghosh D, Griswold J, Erman M, Pangborn W, "Structural basis for androgen specificity and oestrogen synthesis in human aromatase," Nature 457, 219-223 (2009).
  29. Graeff R, Liu Q, Kriksunov IA, Kotaka M, Oppenheimer N, Hao Q, Lee HC, "Mechanism of Cyclizing NAD to Cyclic ADP-ribose by ADP-ribosyl Cyclase and CD38," Journal of Biological Chemistry 284, 27629-27636 (2009).
  30. Gregoire JM, Dale D, Kazimirov A, DiSalvo FJ, van Dover RB, "High energy x-ray diffraction/x-ray fluorescence spectroscopy for high-throughput analysis of composition spread thin films," Rev Sci Instrum 80, 123905 (2009).
  31. Guelker M, Staff L, Wittung-Stafshede P, Shamoo Y, "Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin," Acta Cryst D D65, 523-534 (2009).
  32. Guino-o, MA, Alexander JS, McKee ML, Hope H, Englich UB, Ruhlandt-Senge K, "When VSEPR Fairls: Experimental and Theoretical Investigations of the Behavior of Alkaline-Earth-Metal Acetylides," Chemistry - A European Journal 15(44), (2009).
  33. Guler SD, Ghosh DD, Pan J., Mathai JC, Zeidel ML, Nagle JF, Tristram-Nagle S, "Effects of ether vs. ester linkage on lipid bilayer structure and water permeability," Chemistry and Physics of Lipids 160(1), 33-44 (2009).
  34. Guu TS, Liu Z, Ye Q, Mata DA, Li K, Yin C, Zhang J, Tao YJ, "Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding," Proc Natl Acad Sci USA 106(31), 12992-7 (2009).
  35. Hanrath T, Choi JJ and Smilgies DM, "Structure/Processing Relationships of Highly Ordered Lead Salt Nanocrystal Superlattices," ACS Nano 3(10), 2975-2988 (2009).
  36. He M, Li J, Sorensen ML, hang F, Hancock RR, Fong HH, Pozdin VA, Smilgies D, Malliaras GG, "Alkylsubstituted Thienothiophene Semiconducting Materials: Structure-Property Relationships," J. Am. Chem. Soc. epub, (2009).
  37. Hernandez-Sosa G, Simbrunner C, Hofler T, Moser A, Werzer O, Kunert B, Trimmel G, Kern W, Resel R, and Sitter H, "Modification of para-sexiphenyl layer growth by UV induced polarity changes of polymeric substrates," Org Electron 10 (2), 326-332 (2009).
  38. Himanen JP, Goldgur Y, Miao H, Myshkin E, Guo H, Buck M, Nguyen M, Rajashankar KR, Wang B, Nikolov DB, "Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex," EMBO reports 10, 722-728 (2009).
  39. Himmel DM, Mui S, O`Neall-Hennessey E, Szent-Györgyi AG, Cohen C, "The on-off switch in regulated myosins: Different triggers but related mechanisms," J. Mol Biol PMCID: PMC2997636 394, 496-505 (2009).
  40. Hong X, Hao Q, "Measurements of accurate x-ray scattering data of protein solutions using small stationary sample cells," Rev Sci Instrum 80(1), 014303 (2009).
  41. Hong X, Hao Q, "Combining solution wide-angle X-ray scattering and crystallography: determination of molecular envelope and heavy-atom sites," J. Appl. Cryst. 42(2), 259-264 (2009).
  42. Hong X, Hao Q, "High resolution pair-distance distribution function P(r) of protein solutions," Appl. Phys. Letts. 94(8), 083903 (2009).
  43. Hong X, Newville M, Prakapenka VB, Rivers ML, and Sutton SR, "High quality x-ray absorption spectroscopy measurements with long energy range at high pressure using diamond anvil cell," Review of Scientific Instruments 80(7), p073908, 10p (2009).
  44. Hong X., Hao Q, "Solution Wide-angle X-ray Scattering (waxs) and its Application to Envelope Based Phasing," Biophysical Journal 96(3), 411a (2009).
  45. Hu J, Li J, Qian X, Denic V, Sha B, "The crystal structures of yeast Get3 suggest a mechanism for tail-anchored protein membrane insertion," PLoS One PMCID: PMC2778870 4(11), e8061 (2009).
  46. Huang Y., Smith BS, Chen LX, Baxter RHG and Deisenhofer J, "Insights into pilus assembly and secretion from the structure and functional characterization of usher PapC," PNAS 106(18), 7403-7407 (2009).
  47. Huang YF, Change CW, Smilgies DM, Jeng US, Inigo AR, White JD, Li KC, Lim TS, Li TD, Chen HY, Chen SA, Chen WC, Fann WS, "Correlating Nanomorphology with Charge-Transport Anisotropy in Conjugated-Polymer Thin Films," Advanced Materials 21(29), 2988-2992 (2009).
  48. Im KS, Cheong SK, Liu X, Wang J, Lai MC, Tate MW, Ercan A, Renzi MJ, Schuette DR, Gruner SM, "Interaction between supersonic disintegrating liquid jets and their shock waves," Phys. Rev Lett.PMID: 19257675 102(7), 074501 (2009).
  49. Jiang H, Congleton J, Liu Q, Merchant P, Malavasi F, Lee HC, Hao Q, Yen A, Lin H, "Mechanism-based small molecule probes for labeling CD38 on live cells," J Am Chem Soc 131(5), 1658-9 (2009).
  50. Kamperman M, Burns A, Weissgraeber R, van Vegten N, Warren SC, Gruner SM, Baiker A, Wiesner U, "Integrating structure control over multiple length scales in porous high temperature ceramics with functional platinum nanoparticles," Nano Lett. PMID: 19518088 9(7), 2756-62 (2009).
  51. Kazimirov A, Kohn AG, and Cai ZH, "New imaging technique based on diffraction of a focused x-ray beam," J. Phys. D: Appl. Phys. 42, 012005 (2009).
  52. Kazimirov A, Kohn VG, Snigirev A, Snigireva I, "Spatial structure of a focused X-ray beam diffracted from crystals," J. Synchrotron Radiation 16, 666-671 (2009).
  53. Kim CU, Barstow B, Tate MW, Gruner SM, "Evidence for liquid water during the high-density to low-density amorphous ice transition," Proc. Natl. Acad. Sci. USA 106, 4596-4600 (2009).
  54. Koszelak-Rosenblum M, Krol A, Mozumdar N, Wunsch K, Ferin A, Cook E, Veatch CK, Nagel R, Luft JR, Detita GT, Malkowski MG, "Determination and application of empirically derived detergent phase boundaries to effectively crystallize membrane proteins," Protein Sci; PMCID: PMC2777358 18(9), 1828-39 (2009).
  55. Kozlov G, Nguyen L, Pearsall J, Gehring K, "The structure of phosphate-bound Escherichia coli adenylosuccinate lyase identifies His171 as a catalytic acid," Acta Cryst F; Structural Biology and Crystallization Communications F265, 1-5 (2009).
  56. Kuntz DA, Zhong W, Guo J, Rose DR, and Boons GJ, "The molecular basis of inhibition of Golgi alpha-mannosidase II by mannostatin A," Chembiochem 10(2), 268-77 (2009).
  57. Lamb JS, Zoltowski BD, Pabit SA, Li L, Crane BR, Pollack L, "Illuminating Solution Responses of a LOV Domain Protein with Photocoupled Small-Angle X-Ray Scattering," Journal of Molecular Biology, PMID: 19712683 393(4), 909-919 (2009).
  58. Lang M, Lian J, Zhang JM, Zhang FX, Weber WJ, Trautmann C, and Ewing RC, "Single ion tracks in Gd2Zr2-xTixO7," Physical Review B 79, 224105 (2009).
  59. Lang M, Zhang FX, Ewing RC, Lian J, Trautmann C, Wang ZW, "Structural modifications of Gd2Zr(2-x)Ti(x)O7 pyrochlore induced by swift heavy ions: disordering and amorphization," Journal of materials research 24(4), 1322-1334 (2009).
  60. Lerch TF, Xie Q, Ongley HM, Hare J, Chapman MS, "Twinned crystals of adeno-associated virus serotype 3b prove suitable for structural studies," Acta Cryst F Struct Biol Cryst Commun 65(Pt 2), 177-83 (2009).
  61. Levin E, Quick M and Zhou M, "Crystal structure of a bacterial homologue of the kidney urea transporter," Nature 462(7274), 757-761 (2009).
  62. Li Z, Sai H, Warren SC, Kamperman M, Arora H, Gruner SM and Wiesner U, "Metal Nanoparticle/Block Copolymer Composite Assembly and Disassembly," Chem Mater; PMCID: PMC2988680 21(23), 5578-5584 (2009).
  63. Liu J, Zhang R, Osaka I, Mishra S, Javier AE, Smilgies DM and Kowalewski T & McCullough RD, "Transistor Paint: Environmentally Stable N-Alkyldithienopyrrole and Bithiazole-Based Copolymer Thin-Film Transistors Show Reproducible High Mobilities without Annealing," Advanced Functional Materials 19, 3427-3434 (2009).
  64. Liu Q, Graeff R, Kriksunov IA, Jiang H, Zhang B, Oppenheimer N, Lin H, Potter BVL, Lee HC and Hao Q, "Structural Basis for Enzymatic Evolution from a Dedicated ADP-ribosyl Cyclase to a Multifunctional NAD Hydrolase," J. Biol Chem 284(40), 27637 (2009).
  65. Manuoun B, Leaffer OD, Gupta S, Hoffman EN, Saxena SK, Amini S, Barsoum MW, "On the compression behavior of Ti2InC, OTi0.5, Zr0.5)2InC, and M2SnC(M=Ti, Nb, HF) to quasi-hydrostatic pressures up to 50 GPa," Solid State Communications 149, 1978-1983 (2009).
  66. Martinelli E, Menghetti S, Galli G, Glisenti A, Krishnan S, Paik M, Ober CK, Smilgies DM and Fischer DA, "Surface engineering of styrene/PEGylated-fluoroalkyl styrene block copolymer thin films," Journal of Polymer Science Part A: Polymer Chemistry 47, 267-284 (2009).
  67. Mathijssen SGJ, Smits ECP, van Hal PA, Wondergem HJ, Ponomarenko SA, Moser A, Resel R, Bobbert PA, Kemerink M, Janssen RAJ and de Leeuw DM, "Monolayer coverage and channel length set the mobility in self-assembled monolayer field-effect transistors," Nature nanotechnology online, 1-7 (2009).
  68. Mayes CE and Hoffstaetter G, "Exact CSR Wakes for the 1-D Model," Proceedings PAC09, Vancouver/CA , (2009).
  69. Mayes CE and Hoffstaetter G, "Exact 1D Model for Coherent Synchrotron Radiation with Shielding and Bunch Compression," Physical Review Special Topics: Accelerator Beam 12, 024401 (2009).
  70. McCloskey DE, Bale S, Secrist JA III, Tiwari A, Moss T III, Valiyaveettil J, Brooks WH, Guida WC, Pegg AE, Ealick SE, "New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C8 Substitution in Structural Analogues of S-Adenosylmethionine," J Med Chem. 52, 1388-1407 (2009).
  71. Meyer PA, Ye P, Suh MH, Zhang M, Fu J, "Structure of the 12-subunit RNA polymerase II refined with the aid of anomalous diffraction data," J Biol Chem 284(19), 12933-9 (2009).
  72. Mills TT, Huang J, Feigenson GW, Nagle JF, "Effects of Cholesterol and Unsaturated DOPC Lipid on Chain Packing of Saturated Gel-Phase DPPC Bilayers," Gen Physiol Biophys 28, 126-139 (2009).
  73. Moser A, Werzer O, Flesch HG, Koini M, Smilgies DM, Nabok D, Puschnig P, Ambrosch-Draxl C, Schiek M, Rubahn HG, Resel R, "Crystal structure determination from two-dimenaional powders: A combined experimental and theoretical approach," Eur. Phys. J. Special Topics 167, 59-65 (2009).
  74. Narayana N and Weiss MA, "Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics," J. Mol. Biol. 385, 469-490 (2009).
  75. Navaroo MV, De N, Bae N, Wang Q, Sondermann H, "Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX," Structure 17(8), 1104-16 (2009).
  76. Osaka I, Zhang R, Sauve G, Smilgies DM, Kowalewski T & McCullough RD, "High-Lamellar Ordering and Amorphous-Like pi-Network in Short-Chain Thiazolothiazole-Thiophene Copolymers Lead to High Mobilities," Journal of the American Chemical Society 131, 2521-2529 (2009).
  77. Pabit SA, Finkelstein KD, Pollack L, "Chapter 19 - Using Anomalous Small Angle X-Ray Scattering to Probe the Ion Atmosphere Around Nucleic Acids," Methods in Enzymology 469, 391-410 (2009).
  78. Pabit SA, Qiu X, Lamb JS, Li L, Meisburger SP, Pollack L, "Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA," Nucl. Acids Res. 37(12), 3887-3896 (2009).
  79. Pan J, Tieleman DP, Nagle JF, Kucerka N, and Tristram-Nagle S, "Alamethicin in lipid bilayers: Combined use of X-ray scattering and MD simulations," Biochimica et Biophysica Acta - Biomembranes 1788(6), 1387-1397 (2009).
  80. Pan J, Tristram-Nagle S, Nagle JF, "Alamethicin aggregation in lipid membranes," J. Membrane Biol 231, 11-27 (2009).
  81. Pan J, Tristram-Nagle S, Nagle JF, "Effect of cholesterol on structural and mechanical properties of membranes depends on lipid chain saturation," Phys. Rev. E. 80, 021931 (1-12) (2009).
  82. Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, Havens WM, Nibert ML, Baker TS, Ghabrial SA, Tao YJ, "Atomic structure reveals the unique capsid organization of a dsRNA virus," PNAS 106(11), 4225-4230 (2009).
  83. Patel RN, Heitsch AT, Hyun C, Smilgies DM, Lozanne AD, Loo YL, Korgell BA, "Printed Magnetic FePt Nanocrystal Films," ACS Appl. Mater. Inerfaces 1(6), 1339-1346 (2009).
  84. Pearson CL, Dale DS, Brewer PW, Kunniholm PI, Lipton J and Manning SW, "Dendrochemical analysis of a tree-ring growth anomaly associated with the late Broze Age eruption of Thera," Journal of Archaeological Science 36(6), 1206-1214 (2009).
  85. Podsiadlo P, Michel M, Critchley K, Srivastava S, Qin M, Lee J, Verploegen E, Hart A, Qi Y, and Kotov N, "Diffusional Self-Organization in Exponential Layer-By-Layer Films with Micro- and Nanoscale Periodicity," Angewandte Chemie International Edition 48 (38), 7073-7077 (2009).
  86. Pollard AM, Bilwes AM and Crane BR, "The structure of a soluble chemoreceptor suggests a mechanism for propagating conformational signals," Biochemistry 48, 1936-1944 (2009).
  87. Powers J, Smilgies DM, Geil EC, Clinton K, Dimitrova N, Peachin M and Thorne RE, "X-ray fluorescence imaging analysis of inscription provenance," J. of Archaeological Sci 36(2), 343j-350 (2009).
  88. Ptak CP, Ahmed AH and Oswald RE, "Probing the Allosteric Modulator Binding Site of GluR2 with Thiazide Derivatives," Biochemistry 48, 8594-8602 (2009).
  89. Qiu W, Wernimont A, Tang K, Taylor S, Lunin V, Schapira M, Fentress S, Hui R and Sibley LD, "Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii," EMBO J. 28, 969-979 (2009).
  90. Rahman MN, Vlahakis JZ, Vukomanovic D, Szarek WA, Nakatsu K and Jia Z, "X-ray crystal structure of human hem oxygenase-1 with (2R,4S)-2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-4[((5-trifluoromethylpyridin-2-yl)thio)methyl]-1-3-dioxolane: a novel, inducible binding mode," J. Med. Chem. 52, 4946-4950 (2009).
  91. Red Brewer M, Choi SH, Alvarado D, Moravcevic K, Pozzi A, Lemmon MA and Carpenter G, "The juxtamembrane region of the EGF receptor functions as an activation domain," Mol Cell 34(6), 641-51 (2009).
  92. Rowlett RS, Tu C, Lee J, Herman AG, Chapnick DA, Shah SH, Gareiss PC, "Allosteric site variants of Haemophilus influenzae beta-carbonic anhydrase," Biochemistry 48(26), 6146-56 (2009).
  93. Sagan DC, Hoffstaetter GH, Mayes CE, Sae-Ueng U, "Extended 1D Method for Coherent Synchrotron Radiation Including Shielding," Physical Review Special Topics: Accelerator Beam 12, 040703 (2009).
  94. Shishova EY, Di Costanzo L, Emig FA, Ash DE, Christianson DW, "Probing the specificity determinants of amino acid recognition by arginase," Biochemistry 48, 121-131 (2009).
  95. Singh MA, Groves NM, "Depth profiling of polymer films with grazing-incidence small-angle X-ray scattering," Acta Cryst A A65, 190-201 (2009).
  96. Sippel KH, Robbins AH, Domsic J, Genis C, Agbandje-McKenna M, McKenna R, "High-resolution structure of human carbonic anhydrase II complexed with acetazolamide reveals insights into inhibitor drug design," Acta Crystallogr Sect F Struct Biol Cryst Commun. 65(10), 992-5 (2009).
  97. Smilgies DM, Li R, Di Z, Darko C, Papadakis CM, Posselt D, "Probing the Self-Organization Kinetics in Block Copolymer Thin Films," Mater. Res. Soc. Symp. Proc. 1147-OO01-01, (2009).
  98. Smilgies DM, Kintzel EJ Jr, "Epitaxial orientations of para-sexiphenyl platelets grown on alkali halide (001) surfaces," Phys. Rev. B 79(23), 235413 (2009).
  99. Smilgies DM, "Scherrer grain-size analysis adapted to grazing-incidence scattering with area detectors," J. Appl Crystallogr. 42(6), 1030-1034 (2009).
  100. Smith DK, Goodfellow B, Smilgies DM, Korgel BA, "Self-Assembled Simple Hexagonal AB(2) Binary Nanocrystal Superlattices: SEM, GISAXS, and Defects," J Am Chem Soc epub, 19216526 (2009).
  101. Smith JS and Desgreniers S, "High-Pressure Diffraction Developments at HXMA-Reducing Measured Compton Scattering via Energy Selection," Canadian Light Source 2009 Activity Report 2009, 180-181 (2009).
  102. Son JS, Wen XD, Joo JJ, Chae J, Baek SI, Park K, Kim JH, An K, Yu JH, Kwon SG, Choi SH, Wang Z, Kim YW, Kuk Y, HOffman R, Hyeon T, "Large-Scale Soft Colloidal Template Synthesis of 1.4 nm Thick CdSe Nanosheets," Angewandte Chemie 121, 6993-6996 (2009).
  103. Spitale RC and Wedekind JE, "Exploring ribozyme conformational changes with X-ray crystallography," Methods PMCID: PMC2692201 49, 87-100 (2009).
  104. Spitale RC, Volpini R, Heller MG, Krucinska J, Cristalli G and Wedekind JE, "Identification of an imino group indispensable for cleavage by a small ribozyme," J. Am. Chem. Soc 131(17), 6093-5 (2009).
  105. StefikM, Mahajan S, Sai H, Epps TH, Bates FS, Gruner SM, Disalvo FJ, Wiesner U, "Ordered three- and five-ply nanocomposites from ABC block terpolymer microphase separation with niobia and aluminosilicate sols," Chem Mater. PMCID: PMC2832291 21(22), 5466-5473 (2009).
  106. Tanabe M and Iverson TM, "Expression, purification and preliminary X-ray analysis of the Neisseria meningitidis outer membrane protein PorB," Acta Cryst F 65, 996-1000 (2009).
  107. Tempel W, Wu H, Dombrovsky L, Zeng H, Loppnau P, Zhu H, Plotnikov AN, Bochkarev A, "An intact SAM-dependent methyltransferase fold is encoded by the human endothelin-converting enzyme-2 gene," Proteins 74(3), 789-93 (2009).
  108. Verploegen E, Soulages J, Kozberg M, Zhang T, McKinley G, Hammond P, "Reversible switching of the shear modulus of photoresponsive liquid-crystalline polymers," Angew Chem Int Ed Engl 48(19), 3494-8 (2009).
  109. Vozar S, Poh YC, Serbowicx, Bachner M, Podsiadlo P, Qin M, Verploegen, Kotov N, Hart AJ, "Automated spin-assisted layer-by-layer assembly of nanocomposites," Rev Sci Instrum 80(2), 023903 (2009).
  110. Wang Q, Navarro MV, Peng G, Molinelli E, Lin Goh S, Judson BL, Rajashankar KR, Sondermann H, "Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin," Proc Natl Acad Sci USA 106(31), 12700-5 (2009).
  111. Wang Z, Guo Q, "Size-Dependent Structural Stability and Tuning Mechanism: A Case of Zinc Sulfide," J. Phys. Chem. C 113(11), 4286-4295 (2009).
  112. Warkentin M, Thorne RE, "Slow cooling of protein crystals," J. Applied Crystallography 42, 1-9 (2009).
  113. Werzer O, Flesch HG, Smilgies DM, Resel R, "Temperature Induced Structural Evolution of a Fluorene Thiophene Copolymer on Rubbed Surfaces," J. of Polymer Science: Part B: Polymer Physics 47, 1599-1604 (2009).
  114. Wu R, Reger AS, Lu X, Gulick AM, and Dunaway-Mariano D, "The mechanism of domain alternation in the acyl-adenylate forming ligase superfamily member 4-Chlorobenzoate:CoA ligase," Biochemistry 48, 4115-4125 (2009).
  115. Xiao L, Zhuang L, Liu Y, Lu JT, and Abruna HD, "Activating Pd by Morphology Tailoring for Oxygen Reduction," J Am Chem Soc 131 (2), 602-608 (2009).
  116. Zhang FX, Lang M, Ewing RC, Lian J, Wang ZW, "High pressure response of zirconia Nanoparticles with an alumina shell," Journal of Physical Chemistry C 113(33), 14658-14662 (2009).
  117. Zheng J, Ji AX and Jia Z, "Purification, crystallization and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli," Acta Cryst F65, 1153-1156 (2009).
  118. Zheng J, Lee DC and Jia Z, "Purification, crystallization and preliminary x-ray analysis of isocitrate dehydrogenase kinase/phosphatase from escherichia coli," Acta Cryst F F65, 536-539 (2009).

Ph.D. Theses

  1. Ando N, "Biomacromolecules under high hydrostatic pressure," Ph.D. Thesis, Cornell University, Advisor: Sol Gruner, (2009).
  2. Bale S, "Structural basis for putrescine activation, substrate specificity and inhibitor design of human S-adenosylmethionine decarboxylase," Ph.D. Thesis, Cornell University, Advisor: Steve Ealick, (2009).
  3. Barstow BM, "Direct correlation of protein structure and function using high pressure x-ray crystallography," Ph.D. Thesis, Cornell University, Advisor: Sol Gruner, (2009).
  4. Bennett, AD, "Biophysical characterization of the assembly and disassembly of the ssDNA viruses," Ph.D. Thesis, University of Florida, Advisor: Mavis Agbandje-McKenna, (2009).
  5. Bosworth JK, "Solvent vapro assisted self assembly of patternable block copolymers," Ph.D. Thesis, Cornell University, Advisor: Christopher Ober, (2009).
  6. Choi SH, "Understanding the regulation of epidermal growth factor receptor tyrosine kinase activity," Ph.D. Thesis, University of Pennsylvannia, Advisor: Mark A. Lemmon, (2009).
  7. Chopdekar R, "Magnetism and Magnetotransport in Complex Oxide Thin Film Heterostructures," Ph.D. Thesis, Cornell University, Advisor: Yuri Suzuki, (2009).
  8. De N, "Structural and functional analyses of proteins that regulate cyclic-di-GMP signaling, a pathway controlling biofilm formation," Ph.D. Thesis, Cornell University, Advisor: Richard Cerione, (2009).
  9. Domsic JF, "Structural Studies of the Catalytic Mechanisms of Two Superfast Metalloenzymes: The Carbonic Anhydrases and Manganese Superoxide Dismutases," Ph.D. Thesis, University of Florida, Advisor: Robert McKenna, (2009).
  10. Fields L, "A Study of D Semileptonic Decays to Pseudoscalar Mesons," Ph.D. Thesis, Cornell University, Advisor: Ritchie Patterson, (2009).
  11. Gray RC, "Semileptonic Decays D exp(+) -> eta exp(') l exp (+) v With Generic Reconstruction of Fully Hadronic D exp(+) and D exp(0) Decays," Ph.D. Thesis, Cornell University, Advisor: Lawrence Gibbons, (2009).
  12. Guu TS, "Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding,"Ph.D. Thesis, Rice University, Advisor: Yizhi Jane Tao, (2009).
  13. Lamb J, "Photocoupled time-resolved small angle x-ray scattering applied to a blue light sensing protein," Ph.D. Thesis, Cornell University, Advisor: Lois Pollack, (2009).
  14. Liu Y, X-ray studies of ordered intermetallic phases for fuel cell applications," Ph.D. Thesis, Cornell University, Advisor: Hector Abruna, (2009).
  15. Mayes C, "Energy recovery linear accelerator lattice design & coherent synchrotron radiation," Ph.D. Thesis, Cornell University, Advisor: Georg Hoffstaetter, (2009).
  16. McClure J, "High pressure phase transitions in the lanthanide sesquioxieds," Ph.D. Thesis, University of Nevada, Advisors: Andrew Cornelius and Oliver Tschauner, (2009).
  17. Moorhead MS, "Estimating the thermal properties of thin film and multilayer structures using photothermal deflection spectroscopy," Ph.D. Thesis, Cornell University, Advisor: C Thomas Avedisian, 009).
  18. Morar M, "Structural characterization of enzymes involved in biosyntheses of purines and aromatic amino acids," Ph.D. Thesis, Cornell University, Advisor: Steve Ealick, (2009).
  19. Park J, "Measuring Micromechanical Behavior for Polycrystalline Materials under Cyclic Loading," Ph.D. Thesis, Cornell University, Advisor: Matt Miller, (2009).
  20. Patel B, "The Diverse Functions of Nitric Oxide Synthases in Prokaryotes," Ph.D. Thesis, Cornell University, Advisor: Brian Crane, (2009).
  21. Petrus A, "Exploring oral insulin delivery through vitamin B12 uptake pathway," Ph.D. Thesis, Syracuse University, Advisor: Robert P. Doyle, (2009).
  22. Rastogi A, "High resolution patterning of polymer thin films for nanotechnology applications," Ph.D. Thesis, Cornell University, Advisor: Christopher Ober, (2009).
  23. Shah N, "Elucidation of the Catalytic Mechanism of Golig a-mannosidase II," Ph.D. Thesis, University of Toronto, Advisor: David Rose, (2009).
  24. Spitale R, "Chemical and structural analysis of RNA-based gene regulation," Ph.D. Thesis, University of Rochester, Advisor: Joseph E. Wedekind, (2009).
  25. Sudhamsu J, "Enzymology of proteins involved in nitric oxide production in bacteria and plants," Ph.D. Thesis, Cornell University, Advisor: Brian Crane, (2009).
  26. Tu X, "Structural studies of HIV-1 reverse transcriptase: Resistance to AZT via ATP-mediated excision," Ph.D. Thesis, Rutgers University, Advisor: Eddy Arnold (2009).
  27. Zoltowski B, "Structure and function of the fungal photoreceptor vivid," Ph.D. Thesis, Cornell Univeristy, Advisor: Brian Crane, (2009).