Publications 2012


  1. Ahmed AH, Hamada M, Shinada T, Ohfune Y, Weerasinghe L, Garner PP, Oswald RE, "The structure of (-)-kaitocephalin bound to the ligand binding domain of the AMPA/glutamate receptor, GluA2," J. Biol. Chem. 287(49), 41007-41013 (2012).
  2. Aksit M, Toledo DP, Robinson RD, "Scalable nanomanufacturing of millimetre-length 2D NaxCoO2 nanosheets," J. Mater. Chem. 22, 5936 (2012).
  3. Al-Khatatbeh Y, Lee KKM and Kiefer B, "Compressibility of nanocrystalline TiO2 anatase," Journal of Physical Chemistry C 116(40), 21635-21639 (2012).
  4. Ando N, Kung Y, Can M, Bender G, Ragsdale SW, Drennan CL, "Transient B12-Dependent Methyltransferase Complexes Revealed by Small-Angle X-ray Scattering," Journal of the American Chemical Society, PMID:23051056 134(43), 17945-17954 (2012).
  5. Baiz TI, Heinrich CP, Banek NA, Vivekens BL, Lind C, "In-situ non-ambient X-ray diffraction studies of indium tungstate," J. of Solid State Chemistry 187, 195-199 (2012).
  6. Bauer WJ, Heath J, Jenkins JL, Kielkopf CL, "Three RNA recognition motifs participate in RNA recognition and structural organization by the pro-apoptotic factor TIA-1," J Mol Biol 415(4), 727-40 (2012).
  7. Bedewy M, Meshot ER, Hart AJ, "Diameter-dependent kinetics of activation and deactivation in carbon nanotube population growth," Carbon 50(14), 5106-5116 (2012).
  8. Berke IC, Li Y, Modis Y, "Structural basis of innate immune recognition of viral RNA," Cell Microbiol doi: 10.1111/cmi.12061 epub, (2012).
  9. Berke IC, Modis Y, "MDA5 cooperatively forms dimers and ATP-sensitive filaments upon binding double-stranded RNA," EMBO J, PMID 22314235 31(7), 1714-26 (2012).
  10. Berke IC, Yu X, Modis Y, Egelman EH, "MDA5 assembles into a polar helical filament on dsRNA," Proc. Natl Acad Sci USA 109(45), 18437-41 (2012).
  11. Bian K, Wang Z, Hanrath T, "Comparing the Structural STability of PbS Nanocrystals Assembled in fcc and bcc Superlattice Allotropes," J. Am. Chem. Soc., PMID:22702237 134(26), 10787-10790 (2012).
  12. Boutet S, Lomb L, Williams GJ, Barends TRM, Aquila A, Doak RB, Weierstall U, Deponte DP, Steinbrener J, Shoeman RL, Messerschmidt M, Barty A, White TA, Kassemeyer S, Kirian RA, Seibert MM, Montanez PA, Keeney C, Herbst R, Hart P, Pines J, Haller G, Gruner SM, Philipp HT, Tate MW, Hromalik M, Koerner LJ, van Bakel N, Morse J, Ghonsalves W, Arnlund D, Bogan MJ, Caleman C, Fromme R, Hampton CY, Hunter MS, Johansson LC, Katona G, Kupitz C, Liang M, Martin AV, Nass K, Redeck L, Stellato F, Timneanu N, Wang D, Zatsepin NA, Schafer D, Defever J, Neutze R, Fromme P, Spence JCH, Chapman HN, Schlichting I, "High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography," Science 337, 362 (2012).
  13. Briegel A, Li X, Bilwes AM, Hughes KT, Jensen GJ, Crane BR, "Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins," Proc Natl Acad Sci USA, PMCID: PMC3309718 109(10), 3766-71 (2012).
  14. Celic AS, Petri ET, Benbow J, Hodsdon ME, Ehrlich BE, Boggon TJ, "Calcium-induced Conformational Changes in C-terminal Tail of Polycystin-2 Are Necessary for Channel Gating," J. of Biological Chemistry 287, 17232-17240 (2012).
  15. Chatterjee D, Boyd CD, OToole GA, Sondermann H, "Structural characterization of a conserved, calcium-dependent periplasmic protease from Legionella pneumophila," J. Bacteriol 194(16), 4415-25 (2012).
  16. Chen H, Meisburger SP, Pabit SA, Sutton JL, Webb WW, Pollack L, "Ionic strength dependent persistence lengths of single-stranded RNA and DNA," Proc Natl Acad Sci USA,PMID:22203973 109(3), 799-804 (2012).
  17. Choi JJ, Bian K, Baumgardner WJ, Smilgies DM, Hanrath T, "Interface-Induced Nucleation, Orientational Alignment and Symmetry Transformations in Nanocube Superlattices," Nano Lett, PMID:22888985 12(9), 4791-4798 (2012)
  18. Currie MA, Adams JJ, Faucher F, Bayer EA, Jia Z, Smith SP, "Scaffoldin Conformation and Dynamics Revealed by a Ternary Complex from the Clostridium thermocellum Cellulosome," Journal ob Biological Chemistry 287, 26953-26961 (2012).
  19. Darmon JM, Stieber SCE, Sylvester KT, Fernandez I, Lobkovsky E, Semproni SP, Bill E, Wieghardt K, DeBeer S, Chirik PJ, "Oxidative Addition of Carbon-Carbon Bonds with a Redox-Activ Bis(imino)pyridine Iron Complex," J. Am. Chem Soc 134(41), 17125-17137 (2012).
  20. Das K, Martinez SE, Bauman JD, Arnold E, "HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanism," Nat. Struct. Mol. Biol 19, 253-9 (2012).
  21. Desai TV, Woll AR, Engstrom JR, "Thin Film Growth of Pentacene on Polymeric Dielectrics: Unexpected Changes in the Evolution of Surface Morphology with Substrate," J. Phys. Chem C 116(23), 12541-12552 (2012).
  22. Dharmarajan V, Lee JH, Patel A, Skalnik DG, Cosgrove MS, "Structural basis for SET1 family Win motif recognition by WDR5," Journal of Biological Chemistry 10 287(33), 27275-89 (2012).
  23. Di Z, Posselt D, Smilgies D-M, Li R, Rauscher M, Potemkin II, Papadakis CM, "Stepwise Swelling of a Thin Film of Lamellae-Forming Poly(styrene-b-butadiene) in Cyclohexane Vapor," Macromolecules 45(12), 5185-5195 (2012).
  24. DiMattia MA, Nam JJ, Van Vliet K, Mitchell M, Bennett A, Gurda BL, McKenna R, Olson NM, Sinovits RS, Potter M, Byrne BJ, Aslanidi G, Zolotukhin S, Muzyczka N, Baker TS, Agbandje-McKenna M, "Structural Insight into the Unique Properties of Adeno-Associated Virus Serotype 9," J. of Virology 86(19), 6947-6958 (2012).
  25. Dorin RM, Marques DS, Sai H, Vainio U, Phillip WA, Peinemann KV, Nunes SP, Wiesner U, "Solution Small-Angle X-ray Scattering as a Screening and Predictive Tool in the Fabrication of Asymmetric Block Copolymer Membranes," Macro Letters 1, 614-617 (2012).
  26. Duzynska A, Hrubiak r, Drozd V, Teisseyre H, Paszkowicz W, Reszka A, Kaminska A, Saxena S, Fidelus JD, Grabis J, Monty CJ, Suchocki A, "The structural and optical properties of ZnO bulk and nanocrystals under high pressure," High Pressure Research 32(3), 354-363 (2012).
  27. Fontes E, "CHESS X-ray Facility Report 2012," Synchrotron Radiation News 25(3), 10-17 (2012).
  28. Gao J, Lowe MA, Conte S, Burkhardt SE, Abruna HD, "Poly(2,5-dimercapto-1,3,4-thiadiazole) as a Cathode for Rechargeable Lithium Batteries with Dramatically Improved Performance," Chemistry - A European Journal, PMID: 22644940 8(27), 8521-8526 (2012).
  29. Ghosh D, Lo J, Xi J, Hubbell S, Egbuta C, Jiang W, An J, Morton D, Valette D, Griswold J, Davies HML, "Novel Aromatase Inhibitors by Structure-Guided Design," J. Med Chem 55(19), 8464-76 (2012).
  30. Gregoire JM, McCluskey PJ, Dale D, Ding S, Schroers J, Vlassak JJ, "Combining combinatorial nanocalorimetry and X-ray diffraction techniques to study the effects of composition and quench rate on Au–Cu–Si metallic glasses," Scripta Materialia 66(3-4), 178-181 (2012).
  31. Gruner SM, "Imaging x-ray detectors open new vistas," Physics Today 65, 29-34 (2012).
  32. Gulerez IE, Kozlov G, Rosenauer A, Gehring K, "Structure of the third catalytic domain of the protein disulfide isomerase ERp46," Acta Crystallographica Section F 68, (2012).
  33. Gump JC, Stoltz C, Mason BP, Heim EM, "Equations of state of hexanitrostilbene (HNS)," AIP Conf. Proc. 1426, 575-578 (2012).
  34. Gupta K, Curtis JE, Krueger S, Hwang Y, Cherepanov P, Bushman FD, Van Duyne GD, "Solution conformations of prototype foamy virus integrase and its stable synaptic complex with u5 viral DNA," Structure 20(11), 1918-28 (2012).
  35. Ha JH, Karchin JM, Walker-Kopp N, Huang LS, Berry EA, Loh SN, "Engineering Domain-Swapped Binding Interfaces by Mutually Exclusive Folding," J. Mol Biol, PMID: 22245575 416(4), 495-502 (2012).
  36. Hao GF, Wang F, Li H, Zhu XL, Yang WC, Huang LS, Wu JW, Berry EA, Yang GF, "Computational Discovery of Picomolar Qo Site Inhibitors of Cytochrome bc1 Complex," J. Am. Chem. Soc. 134(27), 11168-11176 (2012).
  37. Harris DM, Corbin K, Wang T, Gutierrez R, Bertolo AL, Petti C, Smilgies DM, Estevez JM, Bonetta D, Urbanowicz BR, Ehrhardt DW, Somerville CR, Rose JKC, Hong M, Debolt S, "Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthase," Proc of the National Academy of Sciences of the USA,PMID: 22375033 109(11), 4098-4103 (2012)
  38. Harter JW, King PD, Monkman EJ, Shai DE, Nie Y, Uchida M, Burganov B, Chatterjee S, Shen KM, "A tunable low-energy photon source for high-resolution angle-resolved photoemission spectroscopy," The Review of Scientific Instruments PMID: 23206047 83, 113103 (2012).
  39. Hayden TA, Limburg KE, Pine WE III, "Using otolith chemistry tags and growth patterns to distinguish movements and provenance of native fish in Grand Canyon," River Research and Applications DOI 10.1002, (2012).
  40. Heberle FA, Pan JJ, Standaert RF, Drazba P, Kucerka N, Katsaras J, "Model-based approaches for the determination of lipid bilayer structure from small-angle neutron and X-ray scattering data," European Biophysics Journal,PMID:22588484 41 (10), 875-890 (2012).
  41. Hiszpanski A, Lee S, Wang H, Woll AR, Nuckolls C, Loo YL, "Post-Deposition Processing Methods to Induce Preferential Orientation in Contorted Hexabenzocoronene Thin Films," ACS Nano, PMID:23228001 7(1), 294-300 (2012).
  42. Holley SM, Ahmed AH, Srinivasan J, Murthy SE, Weiland GA, Oswald RE, Nowak LM, "The Loss of an Electrostatic Contact Unique to AMPA Receptor Ligand Binding Domain 2 Slows Channel Activation," Biochemistry 51(19), 4015-4027 (2012).
  43. Hopkins JB, Badeau R, Warkentin W, Thorne RE, "Effect of common cryoprotectants on critical warming rates and ice formation in aqueous solutions," Cryobiology 65, 169-178 (2012).
  44. Hromalik MS, Green KS, Philipp HT, Tate MW, Gruner SM, "The FPGA Pixel Array Detector," Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment A 701, 7-16 (2012).
  45. Hsu F, Zhu W, Brennan L, Tao L, Luo Z-Q, Mao Y, "Structural basis for substrate recognition by a unique Legionella phosphoinositide phosphatase," PNAS 109(34), 13567-13572 (2012).
  46. Huang R, Bilderback D, "Parameterizing the deformation of LN2-cooled silicon monochromator crystals with modified linear power density function," Proceedings of SPIE 8502, 85020B (2012).
  47. Huang R, Smilgies D, Wang Z, Schuller D and Fontes E, "CHESS 2012 Users` Meeting," Synchrotron Radiation News 25:5, 39-42 (2012).
  48. Hwang J, Kim M, Campbell D, Alsalman HA, Kwak JY, Shivaraman S, Woll AR, Singh AK, Hennig RG, Gorantla S, Rummeli MH, Spencer MG, "van der Waals Epitaxial Growth of Graphene on Sapphire by Chemical Vapor Deposition without a Metal Catalyst," ACS Nano, Article ASAP,PMID:23244231 doi: 10.1021/nn305486x, (2012).
  49. Ji C, Levitas VI, Zhu H, Chaudhuri J, Marathe A, Ma Y, "Shear-induced phase transition of nanocrystalline hexagonal boron nitride to wurtzitic structure at room temperature and lower pressure," Proc. Natl. Acad. Sci, PMID:23129624 109, 19108 (2012).
  50. Ji C, Zheng R, Hou D, Zhu H, Wu J, Chyu MC, Ma Y, "Pressure-induced phase transition in potassium azide up to 55 GPa," J. Appl. Phys. 111, 112613 (2012).
  51. Kang S, Kim CU, Gu X, Owens M, van Rijn S, Boonyaleepun V, Mao Y, Springer TA, Jin MM, "Complex structure of engineered modular domains defining molecular interaction between ICAM-1 and integrin LFA-1," PLoS ONE 7(8), e44124 (2012).
  52. Khan I, Gillilan R, Kriksunov I, Williams R, Zipfel WR, Englich U, "Confocal microscopy on the beamline: novel three-dimensional imaging and sample positioning," J. Appl. Cryst., PMID:22997474 45, 936-943 (2012).
  53. Kim CU, Wierman JL, Gillilan R, Lima E, Gruner SM, "A high-pressure cryocooling method for protein crystals and biological samples with reduced background X-ray scatter," J. Appl Cryst 46(1), 234-241 (2012).
  54. Kintzel EJ Jr., Gillman ES, Skofronick JG, Safron SA, and Smilgies DM, "Investigation of the temperature-dependent surface morphology of p-sexiphenyl thin films on KCl(001)," Mat. Res. Soc. Symp. Proc., accepted (2012).
  55. Kirmizialtin S, Pabit SA, Meisburger SP, Pollack L, Elber R, "RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations," Biophys J; PMID: 23332075 PMCID: PMC3283807 102(4), 819-28 (2012).
  56. Krasnoff SB, Englich U, Miller PG, Shuler ML, Glahn RP, Donzelli BG, Gibson DM, "Metacridamides A and B, Macrocycles from Conidia of the Entomopathogenic Fungus Metarhizium acridum," J. Nat Prod; PMCID: PMC3293398 75(2), 175-80 (2012).
  57. Kropp H, King AE, Khusniyarov MM, Heinemann FW, Lancaster KM, DeBeer S, Bill E, Meyer K, "Manganese Nitride Complexes in Oxidation States III, IV, and V: Synthesis and Electronic Structure," J. Am. Chem. Socl,PMID:22920682 134(37), 15538-15544 (2012).
  58. Kucerka N, Holland B, Pan J, Heberle FA, Gray CG, Tomberli B, Katsaras J, "Scattering Density Profile Model of PG Bilayers As Determined by Molecular Dynamics Simulations, and Small-Angle Neutron and X-ray Scattering Experiments," Biophysical Journal 102, 504a-505a (2012).
  59. Kucerka N, Holland BW, Gray CG, Tomberli B, Katsaras J, "Scattering Density Profile Model of POPG Bilayers As Determined by Molecular Dynamics Simulations and Small-Angle Neutron and X-ray Scattering Experiments," Journal of Physical Chemistry B 116, 232-239 (2012).
  60. Lee SS, Muralidharan S, Woll AR, Loth MA, Li Z, Anthony JE, Haataja M, Loo YL, "Understanding Heterogeneous Nucleation in Binary, Solution-Processed, Organic Semiconductor Thin Films," Chemistry of Materials 24, 2920 (2012).
  61. Lee SS, Tang SB, Smilgies DM, Woll AR, Loth MA, Mativetsky JM, Anthony JE, Loo YL, "Guiding Crystallization around Bends and Sharp Corners," Adv. Mater, PMID:22511330 24, 2692-2698 (2012).
  62. Levitas VI, Ma YZ, Selvi E, Wu JZ and Patten JA, "High density amorphous phase of silicon carbide obtained under large plastic shear and high pressure," Physical Review B 85(5), 054114 (2012).
  63. Li R, Khan HU, Smilgies DM, Anthony JE, Amassian A, "Heterogeneous Nucleation Promotes Carrier Transport in Solution-Processed Organic Field-Effect Transistors," Adv. Funct. Mater., 23(3), 291-297 (2012).
  64. Li R, Ward JW, Smilgies DM, Payne MM, Anthony JE, Jurchescu OD, Amassian A, "Direct Structural Mapping of Organic Field-Effect Transistors Reveals Bottlenecks to Carrier Transport," Advanced Materials,PMID:22887742 24(41), 5553-5558 (2012).
  65. Liang HN, Ma CL, Du F, Cui QL, Zou GT, "High pressure effect on inverse spinel LiCuVO4: x-ray diffraction and Raman Scattering," Chinese Physics 22(1), 016103 (2012).
  66. Lin Y, Lim JA, Wei Q, Mannsfeld SCB, Briseno AL, Watkins JJ, "Cooperative Assembly of Hydrogen-Bonded Diblock Copolythiophene/Fullerene Blends for Photovoltaic Devices with Well-Defined Morphologies and Enhanced Stability," Chem. Mater. 24(3), 622-632 (2012).
  67. Lippa GM, Liberman JA, Jenkins JL, Krucinska J, Salim M, Wedekind JE, "Crystallographic analysis of small ribozymes and riboswitches," Methods Mol Biol; PMID 22315069 848, 159-84 (2012).
  68. Liu J, Haynes D, Balliet C, Zhang R, Kowalewski T, McCullough RD, "Self Encapsulated Poly(3-hexylthiophene)-poly(fluorinated alkyl methacrylate) Rod-Coil Block Copolymers with High Field Effect Mobilities on Bare SiO2," Advanced Functional Materials 22(5), 1024-1032 (2012).
  69. Lowe MA, Gao J, Abruna HD, "In operando X-ray studies of the conversion reaction in Mn3O4 lithium battery anodes," Journals of Material Chemistry A 1, 2094-2103 (2012).
  70. Lunkenbein T, Kamperman M, Li Z, Bojer C, Drechsler M, Forster S, Wiesner U, Muller AHE, Breu J, "Direct Synthesis of Inverse Hexagonally Ordered Diblock Copolymer/Polyoxometalate Nanocomposite Films," J. Am. Chem Soc 134(30), 12685-12692 (2012).
  71. Lunkenbein T, Rosenthal D, Otremba T, Girgsdies F, Li Z, Sai H, Bojer C, Auffermann G, Wiesner U, Breu J, "Access to Ordered Porous Molybdenum Oxycarbide/Carbon Nanocomposites," Chem. Int. Ed. 51, 12892-12896 (2012).
  72. Ma C, Li F, Zhou Q, Huang F, Wang J, Zhang M, Wang Z, Cui Q, "Ammonia molecule rotation of pressure-induced phase transition in ammonia hemihydrates 2NH3·H2O," Royal Society of Chemistry 2, 4920-4924 (2012).
  73. Maeda R, Hayakawa T, Ober CK, "Dual Mode Patterning of Fluorine-Containing Block Copolymers through Combined Top-down and Bottom-up Lithography," Chemistry of Materials 24(8), 1454-1461 (2012).
  74. Matta-Camacho E, Kozlov G, Menade M, Gehring K, "Structure of the HECT C-lobe of the UBR5 E3 ubiquitin ligase," Acta Crystallogr Sect F Struct Biol Cryst Commun. 88(pt 10), 1158-63 (2012).
  75. Maxson J, Cultrera L, Bazarov I, Dunham B, Belomestnykh S, Dobbins J, Karkare S, Kaplan R, Kostroun V, Li Y, Liu X, Lohl F, Smolenski K, Zhao Z, Rice D, Quigley P, Tigner M, Veshcherevich V, Finkelstein K, Dale D, Pichler B, "CHARACTERIZATION OF PHOTOCATHODE DAMAGE DURING HIGH CURRENT OPERATION OF THE CORNELL ERL PHOTOINJECTOR," Proceedings of IPAC2012, New Orleans Louisiana, USA WEPPD082, (2012).
  76. Mayanovic RA, Anderson AJ, Dharmagunawardhane HAN, Pascarelli S, Aquilanti G, "Monitoring synchrotron X-ray-included radiolysis effects on metal (Fe, W) ions in high-temperature aqueous fluids," J. of Synchrotron Radiation,PMID:22898960 19, 797-805 (2012).
  77. McGann JP, Zhong M, Kim EK, Natesakhawat S, Jaroniec M, Whitacre JF, Matyjaszewski K, Kowalewski T, "Block Copolymer Templating as a Path to Porous Nanostructured Carbons with Highly Accessible Nitrogens for Enhanced (Electro)chemical Performance," Macromolecular Chemistry and Physics 213(10-11), 1078-1090 (2012).
  78. Meshot ER, Verploegen E, Bedewy M, Tawfick S, Woll AR, Green KS, Hromalik M, Koerner LJ, Philipp HT, Tate MW, Gruner SM, Hart AJ, "High-Speed in Situ X-ray Scattering of Carbon Nanotube Film Nucleation and Self-Organization," ACS Nano,PMID:22571676 6(6), 5091-5101 (2012).
  79. Miller MP, Suter RB, Lienert U, Beaudoin AJ, Fontes E, Almer J, Schuren JC, "High-energy Needs and Capabilities to Study Multiscale Phenomena in Crystalline Materials," Synchrotron Radiation News 25(6), 18-26 (2012).
  80. Moreau LM, Ha DH, Bealing CR, Zhang H, Hennig RG, Robinson RD, "Unintended Phosphorus Doping of Nickel Nanoparticles during Synthesis with TOP: A Discovery through Structural Analysis," Nano Lett.,PMID:22845819 12(9), 4530-4539 (2012).
  81. Moser A, Flesch HG, Neuhold A, Marchl M, Ausserlechner S, Edler M, Griesser T, Haase A, Smilgies DM, Jakabovic J, Resel R, "Crystallization of pentacene thin films on polymeric dielectrics," Synthetic Metals 161 (23-24), 2598-2602 (2012).
  82. Nady N, Krichevsky L, Zhong N, Duan S, Tempel W, Amaya MF, Ravichandran M, Arrowsmith CH, "Histone Recognition by Human Malignant Brain Tumor Domains," J. Molecular Biology 423 (5), 702-718 (2012).
  83. Nagaoka Y, Chen O, Wang Z, Cao YC, "Structural Control of Nanocrystal Superlattices using Organic Guest Molecules," J. Am. Chem. Soc., PMID:22283741 134(6), 2868-2871 (2012).
  84. Nam KH, Ding F, Haitjema C, Huang Q, Delisa MP, Ke A, "Double-stranded Endonuclease Activity in Bacillus Halodurans Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated Cas2 Protein," J. Biol Chem. 287(43), 35943-52 (2012).
  85. Nam KH, Haitjema C, Liu X, Ding F, Wang H, DeLisa MP, Ke A, "Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system," Structure 20(9), 1574-84 (2012).
  86. Nam KH, Huang Q, Ke A, "Nucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures," FEBS Lett 586(22), 3956-61 (2012).
  87. Nielsen SS, Moller M, Gillilan RE, "High-throughput biological small-angle x-ray scattering with a robotically loaded capillary cell," Journal of Applied Crystallography 45, 213-223 (2012).
  88. Oot RA, Huang LS, Berry EA and Wilkens S, "Crystal Structure of the Yeast Vacuolar ATPase Heterotrimeric EGChead Peripheral Stalk Complex," Structure 20, 1881-92 (2012).
  89. Oot RA, Wilkens S, "Subunit interactions at the V1-Vo interface in the yeast vacuolar ATPase," J. Biol Chem; PMID 22367203 287, 13396-13406 (2012).
  90. Paczkowski JE, Richardson BC, Strassner AM, Fromme JC, "The exomer cargo adaptor structure reveals a novel GTPase-binding domain," EMBO J 31(21), 4191-203 (2012).
  91. Pan J, Heberle FA, Tristram-Nagle S, Szymanski M, Koepfinger M, Katsaras J, Kucerka N, "Molecular structures of fluid phase phosphatidylglycerol bilayers as determined by small angle neutron and X-ray scattering," Biochimica et Biophysica Acta (BBA) - Biomembranes, PMID: 22583835 1818(9), 2135-2148 (2012).
  92. Pan J, Cheng X, Heberle FA, Mostofian B, Kucerka N, Drazba P, Katsaras J, "Interactions between Ether Phospholipids and Cholesterol As Determined by Scattering and Molecular Dynamics Simulations," Journal of Physical Chemistry B 116, 14829-14838 (2012).
  93. Patel S, Blose JM, Sokoloski JE, Pollack L, Bevilacqua PC, "Specificity of the dsRBD from PKR for dsRNA: Insights from Thermodynamics and Small Angle X-ray Scattering," Biochemistry, PMID:23140277 51(46), 9312-9322 (2012).
  94. Philipp HT, Ayyer K, Tate MW, Elser V, Gruner SM, "Solving Structure with Sparse, Randomly-Oriented X-ray Data," arXiv:1203.3353v1, PMID:22714341, (2012).
  95. Pradhan L, Genis C, Scone P, Weinberg EO, Kasahara H, Nam HJ, "Crystal Structure of the Human NKX2.5 Homeodomain in Complex with DNA Target," Biochemistry 51(32), 6312-6319 (2012).
  96. Quan Z, Loc WS, Lin C, Luo Z, Yang K, Wang Y, Wang H, Wang Z, Fang J, "Tilted Face-Centered-Cubic Supercrystals of PS Nanocubes," Nano Lett., PMID:22887742 12(8), 4409-4413 (2012).
  97. Raghunathan M, Zubovski Y, Venable RM, Pastor RW, Nagle JF, Tristram-Nagle S, "Structure and Elasticity of Lipid Membranes with Genistein and Daidzein Bioflavinoids Using X-ray Scattering and MD Simulations," J. Phys Chem B.; PMCID:PMCID:PMC3320743 PMID: 22324769 epub, (2012).
  98. Rao JN, Rivera-Santiago R, Li XE, Lehman W, Dominguez R, "Structural analysis of smooth muscle tropomyosin á and â isoforms," J Biol Chem; PMCID PMC3270971 287(5), 3165-74 (2012).
  99. Revesz P, Pauling A, Krawczyk T, Kelly KJ, "Video Based Beam Position Monitoring at CHESS," SPIE Conference, Advances in X-Ray/EUV Optics and Components VII San Diego, (2012).
  100. Roorda S, Martin C, Droui M, Chicoine M, Kazimirov A, Kycia S, "Disentangling Neighbors and Extended Range Density Oscillations in Monatomic Amorphous Semiconductors," Phys. Rev. Lett 108(25), 255501 (2012).
  101. Roy A, Bhardwaj A, Datta P, Lander GC, Cingolani G, "Small Terminase Couples Viral DNA Binding to Genome-Packaging ATPase Activity," Structure 20(8), 1403-1413 (2012).
  102. Safaee N, Kozlov G, Noronha AM, Xie J, Wilds CJ, Gehring K, "Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G," Mol Cell 48(3), 375-86 (2012).
  103. Sarachan KL, Valentine KG, Gupta K, Moorman VR, Gledhill JM Jr., Bernens M, Tommos C, W and AJ, Van Duyne GD, "Solution structure of the core SMN-Germin2 complex," Biochem J 445(3), 361-70 (2012).
  104. Schrote K, Frey MW, "Effect of irradiation on poly(3,4-ethylenedioxythiophene): poly(styrenesulfonate) nanofiber conductivity," Polymer 54(2), 737-742 (2012).
  105. Schuller DJ, Reisch CR, Moran MA, Whitman WB, Lanzilotta WN, "Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique," Protein Science PMID: 22162093, PMCID: PMC3324773 21, 289-98 (2012).
  106. Schuren JC, Miller MP, Kazimirov A, "A Mechanical Testing Capability for Measuring the Micro Scale Deformation Behavior of Structural Materials," Experimental Mechanics 50(5), 461-479 (2012).
  107. Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, "A Human Ubiquitin Conjugating Enzyme (E2)-HECT E3 Ligase Structure-function Screen," Molecular & Cellular Proteomics 11, 329-341 (2012).
  108. Singh G, Kulkarni M, Yager K, Smilgies DM, Bucknall D, Karim A, "Facile Route to Vertically Aligned High-Aspect Ratio Block Copolymer Films via Dynamic Zone Annealing," Bulletin of the American Physical Society 57, (2012).
  109. Singh G, Kulkarni MM, Smilgies D, Side S, Berry B, Raghavan D, Bucknall DG, Sumpter B, Karim A, "Directed Assembly of Model Block Copolymer-PCBM Blend System for Photovoltaic Applications," Mater. Res. Soc. Symp. Proc. 1390, (2012).
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  112. Smilgies DM, Heitsch AT, Korgel BA, "Stacking of Hexagonal Nanocrystal Layers during Langmuir-Blodgett Deposition," The Journal of Physical Chemistry B, PMID:22537270 116(20), 6017-6026 (2012).
  113. Smilgies DM, Powers JA, Bilderback DH and Thorne RE, "Dual-detector X-ray fluorescence imaging of ancient artifacts with surface relief," J. Synchrotron Radiation 19, 547-550 (2012).
  114. Smith J, Zhang W, Sougrat R, Zhao K, Li R, Cha D, Amassian A, Heeney M, McCulloch I, Anthopoulos TD, "Solution-Processed Small Molecule-Polymer Blend Organic Thin-Film Transistors with Hole Mobility Greater than 5 cm2/Vs," Advanced Materials, PMID:22488874 24(18), 2441-2446 (2012).
  115. Smith JS, Desgreniers S, "Exploiting area detectors to reduce measured Compton scattering via energy selection," Nuclear Instruments and Methods in Physics Research A 668, 9-13 (2012).
  116. Spitler EL, Colson JW, Uribe-Romo FJ, Woll AR, Giovino MR, Saldivar A, Dichtel WR, "Lattice Expansion of Highly Oriented 2D Phthalocyanine Covalent Organic Framework Films," Angewandte Chemie, PMID:22223402 124(11), 2677-2681 (2012).
  117. Stefik M, Wang S, Hovden R, Sai H, Tate MW, Muller DA, Steiner U, Gruner SM, Wiesner U, "Networked and chiral nanocomposites from ABC triblock terpolymer coassembly with transition metal oxide nanoparticles," J. Mater. Chem. 22, 1078 (2012).
  118. Stieber SCE, Milsmann C, Hoytt JM, Turner ZR, Finkelstein KD, Wieghardt K, DeBeer S, Chirik PJ, "Bis(imino)pyridine Iron Dinitrogen Compounds Revisited: Differences in Electronic Structure Between Four- and Five-Coordinate Derivatives," Inorg. Chem 51(6), 3770-3785 (2012).
  119. Sun L, Choi JJ, Stachnik D, Bartnik AC, Hyun BR, Malliaras GG, Hanrath T, Wise FW, "Bright infrared quantum-dot light-emitting diodes through inter-dot spacing control," Nature Nanotechnology, PMID:22562037 7, 369-373 (2012).
  120. Suteewong T, Sai H, Bradbury M, Estroff LA, Gruner SM, Wiesner U, "Synthesis and Formation Mechanism of Aminated Mesoporous Silica," Nanoparticles. Chem. of Materials 24, 3895-3905 (2012).
  121. Tague ME, Gregoire JM, Legard A, Smith E, Dale D, Hennig R, DiSalvo FJ, Van Dover BR, Abruña HD, "High Throughput Thin Film Pt-M Alloys for Fuel Electrooxidation: Low Concentrations of M (M = Sn, Ta, W, Mo, Ru, Fe, In, Pd, Hf, Zn, Zr, Nb, Sc, Ni, Ti, V, Cr, Rh)," J. Electrochem. Soc. DOI: 10.1149/2.003301jes 159, 12 (2012).
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  123. Tracy CL, Lang M, Zhang J, Zhang F, Wang Z, Ewing RC, "Structural response of A2TiO5 (A=La, Nd, Sm, Gd) to swift heavy ion irradiation," Acta Materialia 60(11), 4477-4486 (2012).
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  128. Wang S, Meng YF, Ando N, Tate M, Krasnicki S, Yan C-S, Liang Q, Lai J, Mao Hk, Gruner SM, Hemley RJ, "Single-crystal CVD diamonds as small-angle X-ray scattering windows for high-pressure research," J. of Applied Crystallography, PMID:22675230 45, 453-457 (2012).
  129. Wang S, Tate M, Gruner SM, "Protein crowding impedes pressure-induced unfolding of staphlococcal nuclease," Biochim. Biophys. Acta,PMID: 22503923 1820, 957-961 (2012).
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Ph.D. Theses

  1. Balliet C, "Application of Advanced X-Ray Scattering Techniques to Structural Investigations of Molecular Packing in Conducting Polymers," Ph.D. Thesis, Carnegie Mellon University, Advisors: Tomasz Kowalewski and Richard McCullough (2012).
  2. Bastos-Aristizabal SL, "Structural Studies of Protein Disulfide Isomerases: PDIA1 and PDILT," Ph.D. Thesis, McGill University, Advisor: Kalle Gehring (2012).
  3. Baur R, "Development and application of a grating interferometer at the Cornell High Energy Synchrotron Source," Ph.D. Thesis, Cornell University, Advisor: Sol Gruner (2012).
  4. Chen Y, "Phase behavior of cardiolipin," Ph.D. Thesis, Cornell University, Advisor: Sol Gruner (2012).
  5. Choi JJ, "Nanocrystal Quantum Dots as Building Blocks for Artificial Solids and their Applications in Optoelectronic Devices," Ph.D. Thesis, Cornell University, Advisor: Tobias Hanrath (2012).
  6. Desai TV, "In Situ Real-Time Studies of Organic Semiconductor Thin Film Growth," Ph.D. Thesis, Cornell University, Advisor: James Engstrom (2012).
  7. De Bari H, "Biochemical and Structural Studies of the Yeast bc1 complex," Ph. D. Thesis, SUNY Upstate Medical University, Advisor: Edward Berry (2012)
  8. Gupta A, "Role of a Novel Domain in SF1/U2AF65 Complex Formation and 3` Splice Site Recognition," Ph.D. Thesis, University of Rochester, Advisor: Clara Kielkopf, (2012).
  9. Han HS, "Development of Fluorescent Semi-conductor Nanocrystal Conjugates for in vitro and in vivo Imaging Applications," Ph.D. Thesis, Massachusetts Institute of Technology, Advisor: Moungi Bawendi (2012).
  10. Hauk G, "Regulation of superfamily 2 helicase-type enzymes: Structural and functional studies of Chd1 and Ded1," Ph.D. Thesis, Johns Hopkins University, Advisor: Gregory Bowman (2012).
  11. Hrubiak R, "Exploring thermal and mechanical properties of selected transition elements under Extreme conditions: Experiments at high pressures and high temperatures," Ph.D. Thesis, Florida International University, Advisor: Surendra K. Saxena (2012).
  12. Huang L, "Design of Ultra-large-pore Ordered Mesoporous Silicas and Grafting of Organic Groups on Their Surfaces," Ph.D. Thesis, City of University of New York, Advisor: Michal Kruk (2012).
  13. Ji C, "Studies of Materials under High Pressure for Potential Industrial Applications," Ph.D. Thesis, Texas Tech University, Advisor: Yanzhang Ma (2012).
  14. Kang S, "Engineering leukocyte integrins for therapeutic development against inflammatory diseases," Ph.D. Thesis, Cornell University, Advisor: Moonsoo Jin (2012).
  15. Lee SS, "Elucidating processing-structure-function relationships in solution-processed, organic-semiconductor thin films for transistor applications," Ph.D. Thesis, Princeton University, Advisor: Yueh-Lin Loo (2012).
  16. Li H, "Multi-Dimensional Characterization of the Laser and Electron Beams of the Cornell Energy Recovery Linac Photoinjector Prototype," Ph.D. Thesis, Cornell University, Advisor: Frank Wise (2012).
  17. Li W, "Reactive Surfactants for Atom Transfer Radical Polymerization in Dispersed Media," Ph.D. Thesis, Carnegie Mellon University, Advisor: Tomasz Kowalewski (2012).
  18. Li X, "Architecture of the transmembrane signaling arrays that regulate bacterial chemotaxis," Ph.D. Thesis, Cornell University, Advisor: Brian Crane (2015).
  19. Lowe MA, "In-operando studies of next-geration electrochemical energy storage systems," Ph.D. Thesis, Cornell University, Advisor: Hector Abruna (2015).
  20. Lynch J, "Colloidal Inorganic Nanocrystals: Nucleation, Growth and Biological Applications," Ph.D. Thesis, University of Florida, Advisor: Charles Cao (2012).
  21. Matta-Camacho EP, "Structural Studies of Ubiquitin Related Proteins," Ph.D. Thesis, McGill University, Advisor: Kalle Gehring, (2012).
  22. McGann JP, "Electronic and Structural Foundations of Nitrogen-Rich Nanocarbons for Energy Related Applications," Ph.D. Thesis, Carnegie Mellon University, Advisor: Tomasz Kowalewski (2012).
  23. McKnight J, "Regulation and targeting of the yeast Chd1 chromatin remodeling protein," Ph.D. Thesis, Johns Hopkins University, Advisor: Gregory Bowman (2012).
  24. Meshot E, "Dynamics and Limiting Mechanisms of Self-Aligned Carbon Nanotube Growth," Ph.D. Thesis, University of Michigan, Advisor: A. John Hart (2012).
  25. Oot RA, "Structural Basis for Regulation of the Vacuolar ATPase by Reversible Dissociation," Ph.D. Thesis, State Universitiy of New York Upstate Medical University, Advisor: Stephan Wilkens (2012).
  26. Oswald B, "Focusing Optics for High Energy Synchrotron X-rays," M.Eng. Thesis, Cornell University, Advisor: Mathew Miller (2012).
  27. Ptak C, "Formation of Iron Complexes in Soil Organic Matter and Their Influence on Mobility and Bioavailability of Antimony," Ph.D. Thesis, Cornell University, Advisor: Murray McBride (2012).
  28. Polnerow M, "Short Undulator Capable Beam Line Stops for the Cornell High Energy Synchrotron Source," M.Eng. Thesis, Cornell University, Advisor: Mathew Miller (2012).
  29. Sherwood M, "Electron transfer in multiheme cytochromes of Shewanella oneidensis MR-1: CymA and the dissimilatory metal reduction pathway," Ph.D. Thesis, Boston University (2012).
  30. Samai P, "Lessons in Ligation: Structure -- Function Studies of a Minimal Pluripotent DNA Ligase," Ph.D. Thesis, Weill Medical College of Cornell University, Advisor: Stewart Shuman (2012).
  31. Sarachan K, "Structural studies of the SMN-Gemin2 complex," Ph.D. Thesis, University of Pennsylvania, Advisor: Gregory Van Duyne (2012).
  32. Sepe A, "Structural ordering in block copolymer thin films," Ph.D. Thesis, Technische Universität Munchen, Advisor: Christine Papadakis (2012).
  33. Smith N, "Using mast cells to probe regulation of plasma membrane heterogeneity, membrane trafficking and host-pathogen interactions," Ph.D. Thesis, Cornell University, Advisor: David Holowka (2012).
  34. Song J, "Nanostructure formation of inorganic materials from the self-assembly of highly amphiphilic block copolymers," Ph. D. Thesis, Cornell University, Advisor: Ulrich Wiesner (2012).
  35. Subban CV, "Synthesis and characterization of mixed-metal oxides for catalyst support applications in proton exchange membrane fuel cells," Ph.D. Thesis, Cornell University, Advisor: Frank Disalvo (2012).
  36. Tawfick S, "Mechanocapillary Forming of Filamentary Materials," Ph.D. Thesis, University of Michigan, Advisor: Anastasios John Hart (2012).
  37. Vaidya A, "Characterization of light-signaling in the circadian photoreceptor proteins vivid and cryptochrome," Ph.D. Thesis, Cornell University, Advisor: Brian Crane (2012).
  38. Wang Q, "Molecular basis of bar domain super-family proteins and genetically encoded calcium indicators," Ph.D. Thesis, Cornell University, Advisor: Holger Sondermann (2012).
  39. Wang Y, "Controlled synthesis and property-enhanced functional nanocrystals - Case of indium phosphide, indium oxide and platinum-based alloys," Ph.D. Thesis, Cornell University, Advisor: James Fang (2012).
  40. Zhou Y, "Structure-function studies on novel signaling regulators," Ph.D. Thesis, Cornell University, Advisor: Richard Cerione (2012).


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